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Category: Workflow

Tag: pubmed

Group: Concept profile generation pipeline

Wsdl: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl

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Taverna 2

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Sander van boom

PubMed Search and Solr storage (5)

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Based on the work of Fisher: This workflow takes in a search term, are passed to the eSearch function and searched for in PubMed. I extended by removing outputs and text extraction and addded an automatic Solr storage process using a post.jar, specified by the user. Before running this workflow, make sure that a solr server is up and running and the variable attached to the SolrImport process contains the correct path. Dependencies: - Solr

Created: 2013-07-25 | Last updated: 2013-08-26

Credits: Sander van boom

Attributions: PubMed Search

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