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Showing 11 results. Use the filters on the left and the search box below to refine the results.
Category: Workflow Type: Taverna 1 Curation: tutorial / example

Workflow EBI_InterProScan (3)

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Note: the WSInterProScan web service used by this workflow is no longer available haveing been replaced by the EMBL-EBI's InterProScan (REST) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_rest) and InterProScan (SOAP) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap) web services. Thus the workflow described here no longer works, see the alternative workflows for the InterProScan (SOAP) service for workflows which use the new services. Perform an InterProScan ...

Created: 2008-10-26 | Last updated: 2011-04-01

Credits: User Hamish McWilliam

Workflow BiomartAndEMBOSSAnalysis (4)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-09-15 | Last updated: 2015-01-26

Workflow Workflow for Protein Sequence Analysis (1)

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This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.

Created: 2008-01-09 | Last updated: 2008-01-09

Credits: User M.B.Monteiro

Attributions: Workflow BLAST using DDBJ service Workflow Simplify a BLAST text file Workflow conditional branch

Workflow blast_simplifier.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow EBI_ClustalW2 (2)

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Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default. Note: the WSClustalW2 service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement ClustalW2 servi...

Created: 2009-04-07 | Last updated: 2010-12-06

Credits: User Hamish McWilliam

Workflow get_enzymes_by_gene (1)

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Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow extract_uniprot_embl_gi.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_ontology_analysis.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_ontology_analysis_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_uniprot_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

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