All content

Search filter terms
Filter by category
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 36 results. Use the filters on the left and the search box below to refine the results.
Category: Workflow Type: Taverna 2 Tag: kegg

Workflow KEGG Pathway Analysis (1)

Thumb
The KEGG pathway analysis of the workflow takes a list of UniProt accession numbers in any of the following formats with the following prefixes: External database Database prefix ----------------- --------------- NCBI GI ncbi-gi: NCBI GeneID ncbi-geneid: GenBank genbank: UniGene unigene: UniProt uniprot: It performs this using the web service bconv, provided by the KEGG database (Kanehisa et a...

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Workflow UnigeneID to KEGG Pathways (3)

Thumb
This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2012-01-16 | Last updated: 2012-12-17

Credits: User Katy Wolstencroft User Paul Fisher

Attributions: Workflow NCBI Gi to Kegg Pathways

Workflow NCBI Gi to Kegg Pathway Descriptions (5)

Thumb
This workflow accepts a list of NCBI gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2012-01-12 | Last updated: 2013-01-30

Credits: User Katy Wolstencroft

Attributions: Workflow NCBI Gi to Kegg Pathways

Workflow chebi2keggID (1)

Thumb
This workflow converts a (list of) chebi identifiers to kegg compound identifiers.

Created: 2016-06-21

Credits: User Kristina Hettne

Uploader

Workflow GOgetter (no merge) (1)

Thumb
Retrieves all GO terms (with experimental evidence) associated with the given genelist. The GO terms are returned in a list per gene.

Created: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Workflow pathway difference in ortholog genes (1)

Thumb
This workflow looks at a set of human genes and search for the orthologs of mouse and rat. Then it gets for all the genes the pathways linked to it in Kegg and search for difference in them.

Created: 2016-06-10

Credits: User Tom Rosman User Davy Cats

Uploader

Workflow GOgetter (2)

Thumb
Retrieves all GO terms with experimental evidence associated with the given genelist. A GO term may apear multiple times in the resulting list if it is associated with multiple genes.

Created: 2016-06-10 | Last updated: 2016-06-10

Credits: User Davy Cats User Tom Rosman

Workflow Metabolite pathway search (1)

Thumb
The workflow searches for metabolomic pathways that match the entered keywords and returns information about the chosen pathway

Created: 2014-12-18

Credits: User Alan Williams

Workflow get_Disease_Id_by_Pathway (1)

Thumb
retrieve Disease Id related to a gien pathway in KEGG db

Created: 2012-10-19

Credits: User Massimo La Rosa User Antonino Fiannaca

Workflow Gene_To_Pathways (1)

Thumb
 This workflow identifier the pathways that are associated with given Kegg gene identifiers. Example inputs that can be used to run the workflow are eco:b0002, eco:b0078

Created: 2012-08-06 | Last updated: 2012-09-07

Credits: User Khalid Belhajjame User Stian Soiland-Reyes

Attributions: Workflow Hello Anyone

Results per page:
Sort by: