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Query dbsnp, transform to HTML (1)
This is a XProc worklow. Its input is a list of Entrez queries packed in a html list:
See http://plindenbaum.blogspot.com/2009/05/xml-pipelines-xproc-for-bioinformatics.html
"snp_gene_clin"[Filter] AND "snp_pubmed_cited"[Filter] AND 2[CHR]
(1000[CHRPOS] : 5000[CHRPOS]) AND 2[CHR] AND "homo sapiens"[Organism]
it queries entrez, download the SNPs as XML and transform the result as an HTML table:
r...
Created: 2009-05-21 | Last updated: 2009-05-21
Credits: Pierre Lindenbaum
Transform XML with parameters (1)
Similar to Transform_XML local widget but accepts transformation parameters and skips the part with writing to the output file. The essence, i.e. Transform_XML beanshell works with Strings representing file contents, not with file URLs. The XML transfomation parameters are given as a list of strings in the "param_name = param_value" format.
Created: 2010-11-29 | Last updated: 2010-11-29
Credits: trybik
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