myExperiment - Content

Taverna 2

Uploader

Katy Wolstencroft

Download

This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2012-01-16 | Last updated: 2012-12-17

Credits: Katy Wolstencroft Paul Fisher

Attributions: NCBI Gi to Kegg Pathways

Taverna 2

Uploader

Katy Wolstencroft

NCBI Gi to Kegg Pathway Descriptions (5)

Download

This workflow accepts a list of NCBI gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2012-01-12 | Last updated: 2013-01-30

Credits: Katy Wolstencroft

Attributions: NCBI Gi to Kegg Pathways

Uploader

Paul Fisher

View

Pathway Abstracts for Day7 Microarray Tir1 QTL

Created: 2009-08-11 14:08:41 | Last updated: 2009-08-11 14:15:58

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains all the abstracts for pathways found to be differentially expressed at day 7 post infection and intersect the Tir1 QTL region, from the African Trypanosomiasis project. Each pathway is listed as ">> [Pathway Name]", together with a PubMed identifier, date, and abstract for each article. Each pathway has been restricted to 500 abstracts, and is given in the date range 31/12/2007 to 01/01/2009. Note, some pathways do not have any abstracts available due to th...

File type: Plain text

Comments: 0 | Viewed: 80 times | Downloaded: 0 times

Tags:

abstracts
|
african trypanosomiasis
|
authors
|
cosine vector space
|
data-driven
|
enrichment
|
esearch
|
eutils
|
genotype
|
kegg
|
Kegg Pathways
|
pathway
|
pathway-driven
|
pathways
|
phenotype
|
pubmed
|
term
|
term extraction
|
terms
|
text
|
text mining
|
text mining; term extraction; entity recognition

Uploader

Paul Fisher

View

Pathway Cosine Scores from Day7 and Tir1 QTL

Created: 2009-08-10 15:55:24

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This excel file contains a list of all pathways found to be differentially expressed at day 7 post infection in the trypanosomiasis resistance phenotype, which contain genes in the Tir1 QTL. The pathways in this file have been ranked according to the scores obtained after calculating a cosine vector value against the trypanosomiasis resistance phenotype. The higher the score, the more closely linked to a phentype a given pathway is. This allows each pathway to be ranked giving biologists a ...

File type: Excel workbook

Comments: 0 | Viewed: 87 times | Downloaded: 0 times

Tags:

abstracts
|
african trypanosomiasis
|
cosine vector space
|
data-driven
|
kegg
|
Kegg Pathways
|
pathway
|
pathway-driven
|
pathways
|
phenotype
|
sleeping sickness
|
term
|
term extraction
|
terms
|
text
|
text mining
|
text mining; term extraction; entity recognition
|
trait

Uploader

Paul Fisher

View

Download

Kegg pathway identifiers

Created: 2009-04-08 19:28:52 | Last updated: 2009-08-10 11:03:00

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG pathway identifiers, derived from a list of Ensembl genes found to be located with a given QTL/chromosomal region in the mouse. These genes are located in the Tir1 QTL.

File type: Plain text

Comments: 0 | Viewed: 72 times | Downloaded: 57 times

Tags:

Uploader

Paul Fisher

View

Download

Kegg pathway descriptions

Created: 2009-04-08 19:27:55 | Last updated: 2009-08-10 11:29:34

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG pathway descriptions, identified from genes found within the Tir1 QTL region (for African Trypanosomiasis). Each pathway may contain multiple genes from within the QTL region.

File type: Plain text

Comments: 0 | Viewed: 62 times | Downloaded: 50 times

Tags:

Uploader

Paul Fisher

View

Download

Kegg Pathway release

Created: 2009-04-08 19:25:05 | Last updated: 2009-08-10 12:06:18

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the version of the KEGG pathway database used in the analysis of the Tir1 QTL region

File type: Plain text

Comments: 0 | Viewed: 61 times | Downloaded: 45 times

Tags:

Uploader

Paul Fisher

View

Download

Kegg-Uniprot-Entrez cross-references

Created: 2009-04-08 19:23:53 | Last updated: 2009-08-10 12:08:00

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG gene identifiers, cross-referenced to UniProt and Entrez identifiers. The UniProt and Entrez ids were obtained from BioMart for genes located in the Tir1 QTL region.

File type: Plain text

Comments: 0 | Viewed: 88 times | Downloaded: 88 times

Tags:

Uploader

Paul Fisher

View

Download

Kegg gene descriptions

Created: 2009-04-08 18:06:23 | Last updated: 2009-08-10 12:10:07

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG gene descriptions, for each KEGG gene identified within the Tir1 QTL region.

File type: Plain text

Comments: 0 | Viewed: 78 times | Downloaded: 63 times

Tags:

gene
|
kegg
|
KeggID
|
mouse

Taverna 1

Uploader

Katy Wolstencroft

omim and pathways (2)

Download

This workflow searches OMIM for entries associated with a particular disease in OMIM, returns the IDs and maps them to Kegg Gene IDs. For each gene, it then gets the description and any corresponding pathways those genes are involved with

Created: 2009-03-03 | Last updated: 2009-11-02

Credits: Katy Wolstencroft Paul Fisher

Attributions: Get Kegg Gene information

All content