1. Home

All content

Search filter terms
Filter by category
Filter by type
Filter by tag
biovel
124
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Results per page:
Sort by:
Showing 124 results. Use the filters on the left and the search box below to refine the results.
Tag: biovel
Remove all filters
Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF - ENM Statistical Workflow... (16)

Thumb
The ENM Statistical Difference Workflow (ESW DIFF) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection) coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myexperiment.org/workflows/3355). The difference bet...

Created: 2013-07-08 | Last updated: 2016-06-22

Credits: User Robert Kulawik

Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW STACK - ENM Statistical Workflo... (5)

Thumb
The ENM Statistical Stack Workflow (ESW STACK) allows the computation of the extent, intensity and a cummulated potential species distribution through computation of an average sum layer from the input raster layers using the R statistical environment (R Core Team 2013). The sum layer is computed from all input files. e.g from different distribution of species as a mean value from each corresponding raster cell values, coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myex...

Created: 2013-10-13 | Last updated: 2016-06-22

Credits: User Robert Kulawik

Taverna 2
Uploader
4077?size=60x60 De Antonio Fernandez-Guerra

Workflow Microbial Metagenomic Trait Statistical An... (9)

Thumb
This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database: -GC content -Variance of GC content -Dinucleotides -Number of rRNA -Codon usage -Amino acid composition -Acidic to basic amino acids ratio -% of Transcriptional factors -% of classified reads -Functional content -Functional diversity -Taxonomic content -Taxonomic diversity After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.or...

Created: 2012-12-19 | Last updated: 2014-11-12

Credits: User Antonio Fernandez-Guerra User Renzo User Peliny Network-member BioVeL

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Matrix Population Model construction and analysis pack


Created: 2013-08-13 14:31:09 | Last updated: 2015-06-12 13:48:43

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distanceTh...

4 items in this pack

Comments: 0 | Viewed: 204 times | Downloaded: 43 times

Tags:
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Blob Integral Projection Model documentation

Created: 2013-08-13 13:22:56 | Last updated: 2014-07-04 12:20:25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Integral Projection Model for Demographic Modelling v34 Blob Demographic data Cryptantha flava

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Integral Projection Model Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters ...

File type: Adobe PDF

Comments: 0 | Viewed: 128 times | Downloaded: 85 times

Tags:
Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC ESI version 1.4.1 (3)

Thumb
Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The model can help us to quantify a broad range of ecosystem service indicators. These newly developed measures include: annual wood increment, yearly production of grasslands or croplands, total average carbon stock, annual evapotranspiration, damping of ecosystem daily water outflow, living and dead biomass protecting the soil against erosion,...

Created: 2013-08-12 | Last updated: 2014-10-04

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes Network-member BioVeL

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Matrix Population Models analyses pack


Created: 2013-08-14 10:37:55 | Last updated: 2014-07-25 10:56:14

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment  to perform several analyses on a stage-matrix with no density dependence:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Resample a projection matrix (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distance This workflow has bee...

3 items in this pack

Comments: 0 | Viewed: 61 times | Downloaded: 20 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Integral Projection Models pack


Created: 2013-08-13 12:51:30 | Last updated: 2015-06-12 13:48:44

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Integral Projection Model (IPM) Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters elasticity and sensitivity o...

3 items in this pack

Comments: 0 | Viewed: 92 times | Downloaded: 29 times

Tags:
Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC CARBON 1.2 (4)

Thumb
Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. A new version of the model, called Biome-BGC MuSo was developed to perform more realistic simulations in terms of soil hydrology, and improved ecosystem management options essentially (Hidy et al. 2012; Hidy & Barcza 2014). The Biome-BGC CARBON service executes a single simulation run at a given geographic location under that distinctive environ...

Created: 2013-06-04 | Last updated: 2015-06-12

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes User Zoltan BARCZA Network-member BioVeL

Attributions:

Creator
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
Show View Download Download

Pack Ecosystem modelling with Biome-BGC


Created: 2015-05-19 09:00:27 | Last updated: 2015-06-12 13:48:45

Brings together 5 workflows for ecosystem modelling and calculation of ecosystem service indicators. These workflows are developed around the Biome-BGC biogeochemical modelling software that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000).See descriptions of individual workflows for more details.The workflows in this pack have been created by the Biodiversity Virtua...

5 items in this pack

Comments: 0 | Viewed: 93 times | Downloaded: 6 times

Tags:
Results per page:
Sort by:
Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
About | Privacy | Publications | Contact / Feedback | Mailing List
Icons: Silk icon set 1.3

Copyright © 2007 – 2018 The University of Manchester and University of Southampton