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For loop sample for Trident v1.2 (1)

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  Please refere following link for more information http://tridentworkflow.codeplex.com/Project/Download/FileDownload.aspx?DownloadId=138916

Created: 2010-08-19 | Last updated: 2010-08-24

Credits: Trident

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Interaction with OMERO server from ProStack - screen...

Created: 2010-08-03 07:25:46 | Last updated: 2010-08-03 07:25:49

Credits: Konstantin Kozlov

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: video/mp4

Comments: 0 | Viewed: 43 times | Downloaded: 25 times

Protein Mutation Analysis Using the BioExt... (1)

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This workflow, created using the BioExtract Server, contains a protein query (using the NCBI Protein Database), Blastp, ClustalW, Transeq, Garnier, PepWindowWall, PepInfo, and Octanol. For this workflow, a mutated protein sequence needs to be selected. Once the corresponding non-mutated sequence has been queried, the Blastp tool can be used to find sequences similar to the one queried, and the ClustalW tool can be used to analyze whether the mutation is conserved within species.  The Tra...

Created: 2010-07-22 | Last updated: 2010-07-22

Credits: Kendra Giesey Yosr Bouhlal BioExtract Server for Genomics

Phylogenetic Study Using the Bio Extract S... (2)

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This workflow, created using the BioExtract Server, contains a nucleotide query (using the NCBI Core Nucleotide Database), Blastn (against the Homo sapiens genome), Blastn (against the Mus musculus genome), the Format Conversion tool, the Fetch Translator Tool, and ClustalW. This workflow was created following the analytical steps described in the journal article "Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced the...

Created: 2010-06-17 | Last updated: 2010-07-19

Credits: Kendra Giesey BioExtract Server for Genomics

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ProStack Screencast: Segmentation of Images of Gene ...

Created: 2010-05-20 19:48:40

Credits: Konstantin Kozlov

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: AVI video

Comments: 0 | Viewed: 45 times | Downloaded: 21 times

Get KEGG gene descriptions and pathways (1)

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This workflow takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identif...

Created: 2010-04-30 | Last updated: 2010-04-30

Credits: Nadia Cerezo Paul Fisher

Attributions: Get Kegg Gene information

Angiogenesis Feature Extraction workflow (3)

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Created: 2010-03-23 | Last updated: 2012-01-10

Credits: Charalampos

raw2nexus taverna 2 workflow using pt-mapr... (5)

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Created: 2013-12-12 | Last updated: 2014-06-20

Credits: Alastairduncan