myExperiment - Content

Results per page:

Sort by:

Showing 2 results. Use the filters on the left and the search box below to refine the results.

Type: Taverna 1

Tag: pathway-driven

User: Paul Fisher

Licence: by-sa

Wsdl: http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

Remove all filters

Taverna 1

Uploader

Paul Fisher

Mouse Microarray Analysis (3)

Download

This workflow takes in probesets from and AffyMetrix micorarray experiment and returns: the genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids; affy probeset identifiers for chips Mouse430_2 and Mouse430a_2. Example ids from the Mouse430_2 affymetrix array are as follows (newline separated): 1447227_at 1440624_at 1436240_at 1454904_at 1435665_at 1418148_at 1429831_at

Created: 2007-10-03 | Last updated: 2009-12-03

Taverna 1

Uploader

Paul Fisher

Pathways and Gene annotations for QTL region (2)

Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the Pig, Sus scrofa. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway ...

Created: 2009-11-20 | Last updated: 2009-11-20

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for QTL region

Results per page:

Sort by:

All content