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User: Aleksandra Pawlik Licence: by-sa
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4059?size=60x60 Gb Aleksandra Pawlik
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Blob REST Service Tutorial

Created: 2013-09-05 12:12:56

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

REST Services Tutorial to be used for the workshop at Bonn University 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 51 times | Downloaded: 40 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Shims and Beanshells - tutorial

Created: 2013-09-05 09:49:45

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Shims and Beanshell - introductory tutorial for the workshop at Bonn University 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 40 times | Downloaded: 35 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell tutorial

Created: 2013-09-05 09:46:43

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial by Peter Li - to be used for the workshop at Bonn University, 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 49 times | Downloaded: 46 times

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Taverna 2
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4059?size=60x60 Gb Aleksandra Pawlik

Workflow BioVeL workshop reduced full workflow (1)

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The workflow is a reduced version of the main workflow. It can be used to call web services to support biodiversity research. It fetches data from GBIF. The occurrences are then used to create a model using OpenModeller, test the model and to project the model. The projection of the model is currently a "native projection" i.e. it uses the same layers as those used to create the model. The services within the workflow will allow non-native projections

Created: 2013-09-04

Credits: User Katy Wolstencroft User Alan Williams

Attributions:

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna -part2 - Bonn 2013

Created: 2013-09-03 22:28:51

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to Taverna workflows: myExperiment, nested workflows, Spreadsheet import, BioMart, exploring workflow engine. This is a tutorial for the workshop at Bonn University 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 62 times | Downloaded: 64 times

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Taverna 2
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4059?size=60x60 Gb Aleksandra Pawlik

Workflow Pathway to Pubmed (1)

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This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2013-09-03

Credits: User Alan Williams User Paul Fisher

Attributions: Workflow Pathway to Pubmed

Taverna 2
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4059?size=60x60 Gb Aleksandra Pawlik

Workflow UnigeneID to KEGG Pathways (1)

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This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database. This workflow replaces the earlier SOAP version with the new KEGG REST services

Created: 2013-09-03

Credits: User Katy Wolstencroft User Alan Williams User Paul Fisher

Attributions: Workflow NCBI Gi to Kegg Pathways

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna - Bonn 2013

Created: 2013-09-03 20:22:55

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna - tutorial for the workshop at Bonn University, 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 57 times | Downloaded: 59 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Nested UnigeneID_to_KEGG in Import and Convert

Created: 2013-08-29 14:09:53

Credits: User Katy Wolstencroft User Alan Williams User Paul Fisher

Attributions: Workflow UnigeneID to KEGG Pathways

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example of a nested workflow, created for the training purposes.

File type: Trident (Package)

Comments: 0 | Viewed: 31 times | Downloaded: 15 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob GalaxyGeneList - long : datafile for training

Created: 2013-08-29 10:25:07

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Chip-Seq gene list example used for training purposes. This is the original version of the file  (approx 400 entries). Warning! Running this file in some workflows may  take up to 30 minutes! If you want to use it for training, you may want to reconsider and use the shorter version of the file which is also uploaded.

File type: Excel workbook

Comments: 0 | Viewed: 29 times | Downloaded: 16 times

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