Files

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Results per page:
Sort by:
Showing 81 results. Use the filters on the left and the search box below to refine the results.
Group: BioVeL internal
Uploader
Project Biovel

Blob Matrix Population Models construction and analyses d...

Created: 2014-07-25 10:48:13 | Last updated: 2014-07-25 10:50:17

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Matrix Population Models construction and analyses Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival cur...

File type: Adobe PDF

Comments: 0 | Viewed: 40 times | Downloaded: 37 times

Tags:

Uploader
Project Biovel

Blob Bootstrap of observed census transitions documentation

Created: 2014-07-25 10:37:03

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Bootstrap of observed census transitions (confidence intervals of λ) workflow for local execution calculates bootstrap distributions of population growth rates (λ), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to est...

File type: Adobe PDF

Comments: 0 | Viewed: 17 times | Downloaded: 18 times

Tags:

Uploader
Project Biovel

Blob Parametric Bootstrap or Resample a projection matrix...

Created: 2014-07-25 09:41:10

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Parametric Bootstrap or Resample a projection matrix Workflow

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and ...

File type: Adobe PDF

Comments: 0 | Viewed: 24 times | Downloaded: 23 times

Tags:

Uploader
Project Biovel

Blob Age-specific survival documentation

Created: 2014-07-24 11:48:40

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Age specific analysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with the same name.The age-specific survival analysis workflow gives the basic information of the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time of death.AnalysesFundamental matrix (N)Variance(var)Coefficient of variation (CV)MeanetaVareta

File type: Adobe PDF

Comments: 0 | Viewed: 23 times | Downloaded: 15 times

Tags:

Uploader
Project Biovel

Blob Keyfitz’s delta documentation

Created: 2014-07-24 08:25:05

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Keyfitz delta

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with the same name.The Keyfitz’s delta Workflow provides an environment to calculate the Keyfitz delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (w...

File type: Adobe PDF

Comments: 0 | Viewed: 12 times | Downloaded: 9 times

Tags:

Uploader
Project Biovel

Blob Cohen’s cumulative distance documentation

Created: 2014-07-24 08:20:42

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Cohen’s cumulative distance

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n...

File type: Adobe PDF

Comments: 0 | Viewed: 14 times | Downloaded: 31 times

Tags:

Uploader
Project Biovel

Blob TEST DEMO Daily Observation Data 2001-2002 - HUMUS

Created: 2014-05-27 15:20:38

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO Daily Observation Data 2001-2002 - HUMUS

File type: text/csv

Comments: 0 | Viewed: 18 times | Downloaded: 16 times

Tags:

Uploader
Project Biovel

Blob TEST DEMO Daily Observation Data 2001-2002 - AIR

Created: 2014-05-27 15:18:56

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO Daily Observation Data 2001-2002 - AIR

File type: text/csv

Comments: 0 | Viewed: 17 times | Downloaded: 12 times

Tags:

Uploader
Project Biovel

Blob TEST DEMO Daily Observation Data 2001-2002 - HUMUS

Created: 2014-05-26 09:44:56

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO Daily Observation Data 2001-2002 - HUMUS for GLUE analysis

File type: text/csv

Comments: 0 | Viewed: 12 times | Downloaded: 11 times

Tags:

Uploader
Project Biovel

Blob TEST DEMO Daily Observation Data 2001-2002 - AIR

Created: 2014-05-26 09:43:22

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO Daily Observation Data 2001-2002 - AIR for GLUE analysis

File type: text/csv

Comments: 0 | Viewed: 10 times | Downloaded: 9 times

Tags:

Results per page:
Sort by: