Bonn workshop 20122012-08-29T11:39:39+00:00/groups/10782012-10-31T11:54:16+00:00Mcornell joined the Bonn workshop 2012 groupurn:uuid:cb251431-2e48-49b4-a48d-27f3ae350c05Mcornell2012-09-14T09:51:22+00:00Helen Hulme shared Agenda of Bonn tutorialThis is the list of presentations and workshop items from the Bonn tutorial 2012. The presentations (and many of the workflows and datafiles) for this are in the pack: "Pack for Bonn2012" http://www.myexperiment.org/packs/330urn:uuid:dd524b55-ba9d-4332-96cd-910710a3bae8Helen Hulme2012-09-05T12:11:17+00:00Mcasfrox shared [untitled]complete part one of assignmenturn:uuid:ffa15605-b55d-4846-8563-d38417360c76Mcasfrox2012-09-05T10:17:09+00:00Yoshiaki Ueda joined the Bonn workshop 2012 groupurn:uuid:f1d83671-ec60-4825-b5de-fdd3ba7fa63eYoshiaki Ueda2012-09-05T08:20:34+00:00Katy Wolstencroft shared Workflow Assignment Instructionsurn:uuid:ec70fa8f-842f-4998-903d-fd9e5d9432ffKaty Wolstencroft2012-09-05T07:20:29+00:00Helen Hulme shared Assignment Data - suggested SNPs Here are some SNPs you can use for the assignment on day 3 of the Bonn 2012 Taverna course. The assignment is about SNP annotation and analysis If you would prefer to use some others that you are working with, fine. This data is a column of dbSNP identifiers urn:uuid:2573e8a0-7a5e-46de-9f20-040bfd36fef8Helen Hulme2012-09-04T10:17:41+00:00Helen Hulme shared Bonn Taverna Presentation - Case Studies Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipelineurn:uuid:bab2da2c-d8dd-4f85-afd3-0cbb91a38fb7Helen Hulme2012-09-04T09:33:12+00:00Adhil joined the Bonn workshop 2012 groupurn:uuid:40ac458c-33c0-4f98-add7-6329bda5aa08Adhil2012-09-04T09:32:43+00:00Arif joined the Bonn workshop 2012 groupurn:uuid:f8a0490c-dab2-4fd8-9d61-55281ba402b4Arif2012-09-04T09:32:24+00:00Katy Wolstencroft shared BiomartAndEMBOSSDiseaseThis workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions with mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned. Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.urn:uuid:2a2f33d8-6d99-4c6f-9489-e039ea0d8ac5Katy Wolstencroft2012-09-04T09:31:27+00:00Immadi joined the Bonn workshop 2012 groupurn:uuid:47d5f213-c26e-4134-9f46-3d2557ab7ef4Immadi2012-09-03T19:34:12+00:00Katy Wolstencroft shared Bonn Tutorial REST servicesThis is a brief introduction to using REST servicces through Tavernaurn:uuid:d9621980-81c9-4bf3-962f-4e3888d3f466Katy Wolstencroft