BioExtract Server for Genomics2011-11-22T12:34:50+00:00/groups/1192017-02-05T14:12:06+00:00Dr Kaveh Ostad Ali Askari joined the BioExtract Server for Genomics groupurn:uuid:25530a8f-c236-423d-9078-f86fbc9fb443Dr Kaveh Ostad Ali Askari2011-06-20T20:55:26+00:00Yosr Bouhlal shared Biomart SNP<!--[if gte mso 9]><xml> <o:OfficeDocumentSettings> <o:AllowPNG /> </o:OfficeDocumentSettings> </xml><![endif]--> <!--[if gte mso 9]><xml> <w:WordDocument> <w:View>Normal</w:View> <w:Zoom>0</w:Zoom> <w:TrackMoves /> <w:TrackFormatting /> <w:PunctuationKerning /> <w:ValidateAgainstSchemas /> <w:SaveIfXMLInvalid>false</w:SaveIfXMLInvalid> <w:IgnoreMixedContent>false</w:IgnoreMixedContent> <w:AlwaysShowPlaceholderText>false</w:AlwaysShowPlaceholderText> <w:DoNotPromoteQF /> <w:LidThemeOther>EN-US</w:LidThemeOther> <w:LidThemeAsian>X-NONE</w:LidThemeAsian> <w:LidThemeComplexScript>AR-SA</w:LidThemeComplexScript> <w:Compatibility> <w:BreakWrappedTables /> <w:SnapToGridInCell /> <w:WrapTextWithPunct /> <w:UseAsianBreakRules /> <w:DontGrowAutofit /> <w:SplitPgBreakAndParaMark /> <w:EnableOpenTypeK …urn:uuid:5dab05c6-4d59-4d1b-9460-5f442b5c38a2Yosr Bouhlal2010-11-03T17:23:22+00:00Yosr Bouhlal shared Sacs Gene Muation AnalysisThis workflow was created to predict the effect of the mutation on the primary and the secondary structure of a mutated sacsin protein. The genomic sequence bearing the mutation should be pasted on FASTA format as input for the Transeq tool. This sequence will be translated to protein and compared to the wild type protein, already extracted from NCBI database, through the Supermatcher tool. Variation(s) will be verified by multiple alignment using Blastp and ClustalW tools. Prediction of the variation(s) effects will be proceeded by four online tools : Pepstat , Garnier , hmoment and Pepinfo tools. All the results can be extracted from the workflow general report by clicking on "provenance". This workflow can be used for other mutation analysis in other genes or proteins by modifying the ac …urn:uuid:2aa04d6c-470d-452d-9d92-be6652b9b49dYosr Bouhlal2010-06-14T18:03:04+00:00Yosr Bouhlal joined the BioExtract Server for Genomics groupurn:uuid:3dc349c4-b465-46df-80d9-a9d7099538a8Yosr Bouhlal2008-10-30T16:39:23+00:00Carol Lushbough created the BioExtract Server for Genomics groupurn:uuid:e2d1d8d7-88f2-4264-9264-8453e98477e2Carol Lushbough