SabrOndexProject2011-11-22T12:34:55+00:00/groups/1502011-09-01T17:18:05+00:00Paul Fisher shared Ondex WorkflowsThis zip file contains a large number of Taverna 2 workflows that utilise the Ondex Web Service, for manipulating Ondex graphs.urn:uuid:45fcd3c0-7495-416b-8ef3-c03a158d35d6Paul Fisher2010-01-18T16:01:28+00:00Christian joined the SabrOndexProject groupurn:uuid:aa109c79-05ba-4dcf-82bd-7bc73e46bbb8Christian2010-01-12T13:21:31+00:00Jweile joined the SabrOndexProject groupurn:uuid:0d0e06b3-1352-4c44-a6ae-3b9af7dbb465Jweile2009-12-15T18:06:33+00:00Catherine Canevet joined the SabrOndexProject groupurn:uuid:ea5d461f-ef3c-4c16-908b-2dfabd5539b5Catherine Canevet2009-12-01T15:15:22+00:00Levow joined the SabrOndexProject groupurn:uuid:ab057d84-e5ee-4741-aa83-cae7794e0702Levow2009-11-16T15:01:33+00:00George joined the SabrOndexProject groupurn:uuid:b25c48b6-8063-449d-9547-3df55f0db1b6George2009-11-02T16:15:58+00:00Paul Fisher shared KEGG Compounds to Inchi stringsThis file contains a list of KEGG compounds which are reffered to by their Inchi strings.urn:uuid:05d8985e-cca3-4666-9792-404b46a45682Paul Fisher2009-10-22T13:50:59+00:00Paul Fisher shared Ondex and Taverna TutorialBiological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project ( http://ondex.org/sabr.html ) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks.urn:uuid:a3395523-7356-4e47-a9f2-c089e9fca378Paul Fisher2009-10-20T14:38:07+00:00Ian Dunlop joined the SabrOndexProject groupurn:uuid:10208e95-8807-4fca-97c5-4576b2d7ab9dIan Dunlop2009-08-24T17:31:37+00:00Andrea joined the SabrOndexProject groupurn:uuid:269bd934-240d-4e9a-8394-5ea6b1060729Andrea2009-08-19T16:35:11+00:00Paul Fisher shared Unconnected FilterThis workflow removes any unconnected nodes from a given Ondex graph through filtering, and returns a new Ondex Graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. RemoveContextDependencies - Set true to remove context dependencies, otherwise unconnected concepts will still remain in the graph (Optional). Default value is false. (boolean) ConceptClassRestriction - A Concept Class Restriction as an ordered pair representing from and to Concepts in an evaluated Relation. (add the reverse compliment if direction is not important) - (Optional)urn:uuid:e7c002f7-bad2-4f4c-b341-cbd7f8f0d3d7Paul Fisher2009-08-19T16:34:18+00:00Paul Fisher shared Tranitive FilterThis workflow filters an Ondex graph to extract a sub-graph. The result is a new Ondex graph containing only the transitive sub-graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. CV - Seed cv that will be used to extract the subgraph (Optional). AttributeName - Seed attribute name that will be used to extract the subgraph (Optional). level - Cutoff level (Optional).urn:uuid:cb116d2d-c179-4391-acfd-0bb19441462bPaul Fisher