Created: 2015-04-03 21:08:40
Credits: Eleni BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: application/x-ruby
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Group for members of the BioSemantics group and their close collaborators.
Biosemantics
With the explosion of information in the biomolecular field, there is a dire need for information technology that assists in retrieving, extracting, and relating information and knowledge in the biomedical literature and databases. Biosemantics researchers and developers develop, evaluate, and apply such technology, focusing on elucidation of hidden or implicit knowledge and resolution of mechanisms behind rare and common diseases.
Biosemantics groups in the Netherlands form the core of the Netherlands' activities towards interoperability and preservation of methods and data, for which they participate in the Data Integration and Stewardship Centre (DISC), the Dutch node in Elixir.
Created at: Thursday 30 June 2011 13:06:48 (UTC)
Unique name: biosemantics
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Created: 2015-04-03 21:08:40
Credits: Eleni BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: application/x-ruby
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Created: 2015-04-03 21:05:56
Credits: Eleni BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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HTT-HPO concept profile match result
Created: 2014-10-20 08:26:32 | Last updated: 2014-10-20 08:35:28
Credits: Marco Roos Rajireturn BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: Excel workbook
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Concept Profile of phenotype Chorea
Created: 2014-10-20 08:34:10
Credits: Marco Roos BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
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Workflow
Chemical2URIs (1)
Created: 2015-08-18
Workflow
Get HPO concept label and synonym (1)
Created: 2014-10-20 | Last updated: 2014-10-20
Credits: Rajireturn BioSemantics
Workflow
Match concept to HPO profiles (1)
Created: 2014-10-20
Credits: Marco Roos BioSemantics
Attributions: Match concept profiles Get concept information
Workflow
HPO-UMLS-ConceptID mapping (1)
Created: 2014-10-20
Credits: Marco Roos BioSemantics
Workflow
Created: 2015-04-03
Credits: Eleni BioSemantics
Attributions: create nanopublications converter_nanopublications
Workflow
Created: 2015-04-03
Credits: Eleni BioSemantics
Workflow
Created: 2015-04-03
Credits: Eleni BioSemantics
Workflow
Explain score between two concepts (1)
Created: 2015-04-03
Credits: Eleni BioSemantics
Workflow
Get concept suggestions from term (1)
Created: 2013-08-31
Credits: Eleni BioSemantics
Workflow
Annotate a gene list with disease concepts (1)
Created: 2013-02-06
Credits: Kristina Hettne Reinout van Schouwen Marco Roos BioSemantics
Attributions: SNPs to Concept Set through Concept Profile Matching v2
Workflow
Match concept profiles with predefined set (2)
Created: 2013-02-05 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen BioSemantics
Workflow
Created: 2012-06-26 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics
Workflow
SNPs to Concept Set through Concept Profil... (6)
Created: 2012-06-26 | Last updated: 2013-02-05
Credits: Kristina Hettne Eleni Harish Dharuri Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Attributions: Find Supporting Documents SNP_ID2EntrezGene_ID DatabaseID to ConceptID Match gene lists based on information in literature Match concept profiles Explain concept scores
Workflow
Get Concept IDs (5)
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie Marco Roos BioSemantics
Workflow
Find co-occurring documents (6)
Created: 2012-07-13 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Workflow
Filter concepts with profiles (4)
Created: 2012-09-14 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie BioSemantics
Workflow
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics
Workflow
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Workflow
Created: 2012-06-25 | Last updated: 2014-07-14
Credits: Marco Roos Martijn Schuemie Reinout van Schouwen BioSemantics
Workflow
Match gene lists based on information in l... (7)
Created: 2012-04-17 | Last updated: 2012-04-25
Credits: Marco Roos Reinout van Schouwen Eleni Kristina Hettne BioSemantics
Attributions: Match concept profiles Explain concept scores