Snapshot of the Pack: Extract Gene Sequence Information with Kepler

External items (4)

• Extract Gene Sequence Actor - https://docs.google.com/leaf?id=0B75FJjlkC37wZGUxOGY3NzQtMjA5MS00ZDEwLWEyZTItOTAwZmY0ZWZlMjNm&hl=en_US
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  Added to pack by: Wdsnellg (05/10/2011 @ 05:37:14)
  Comment:

  This is what the "Extract Gene Sequence" actor looks like when opened. By using the string substring, string index of, and string length components, I was able to display only the last part of the sequence (ORIGIN) only.

• Extract Header Information Actor - https://docs.google.com/leaf?id=0B75FJjlkC37wMzc1YzkxMTgtNzVkOS00OTU1LTk4MTUtZTE1NDZmYzMwZTVm&hl=en_US
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  Added to pack by: Wdsnellg (05/10/2011 @ 05:31:14)
  Comment:

  This is what the "Extract Header Information" actor looks like when opened. A string substring and string index component are combined to allow only the information above REFERENCE within the sequence results to show.

• Multiple Tab Output - https://docs.google.com/document/d/13J3rZA4QhLCqmHpgiRvr6IapXVA2AyvDsQH3m-YPmrk/edit?hl=en_US
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  Added to pack by: Wdsnellg (05/10/2011 @ 05:20:26)
  Comment:

  This is what the multiple tab output will look like within Kepler. By using two "Multiple Tab" Displays (BP=Base Pair, sequence= gene sequence), one is able to view both output in one window. I did this because the base pair count and ratio data are a summary of the sequence itself, so it made sense to combine them. For this example, the accession ID U49845 was used as the input.

• Header Information File Writer Output - https://docs.google.com/document/d/1S8yOJa2EW-kyuEiZXCoRQDdlSrSSRKjE_85KwmiIb5o/edit?hl=en_US
  Alternate link: none
  

  Added to pack by: Wdsnellg (05/10/2011 @ 05:14:38)
  Comment:

  This is the header information file writer output. Within the workflow, one can configure the "Header Information File Writer" actor to change the file name and assign the file destination. This is what the typical output will look like. The accession ID U49845 was used as input for this example.