Snapshot of the Pack: Visualize PAV provenance as SVG

Downloaded from myExperiment website

Snapshot generated at 06:47:24 on Monday, 21 July 2025

Pack Details

Title Visualize PAV provenance as SVG
Items 11
Created by Stian Soiland-Reyes
Created at 09:18:51 on Friday, 05 April 2013
Last updated at 11:39:09 on Thursday, 04 January 2018

Description

A workflow that converts PAV provenance to SVG by inferring PROV-O statements.

VoID descriptions  following the Open PHACTS Dataset descriptions specification are fetched as Turtle , cleaned up to be valid OWL2 ontology and include useful labels, processed through the OWL reasoner Pellet ; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox , generating an SVG visualization of the provenance.

Note that this workflow downloads CWM , Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 with Taverna 2.4.0.

This pack is licensed as AGPL 3.0  (not GPL 2.0 as myExperiment states) as includes (links to) the Pellet source code/binary. The workflow does not bundle Pellet, but it downloads it on demand. 


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