Description
A workflow that converts
PAV provenance
to SVG by inferring
PROV-O
statements.
VoID descriptions
following the
Open PHACTS Dataset descriptions specification
are fetched as
Turtle
, cleaned up to be valid
OWL2 ontology
and include useful labels, processed through the OWL reasoner
Pellet
; this adds inferred PROV statements to the RDF, which is then fed to the
PROV Toolbox
, generating an SVG visualization of the provenance.
Note that this workflow downloads
CWM
, Pellet and ProvToolbox on demand, and uses UNIX command line tools like
wget
and
md5
which are unlikely to work in Windows. This workflow has been tested on
Ubuntu 12.10
with
Taverna 2.4.0.
This pack is licensed as
AGPL 3.0
(not GPL 2.0 as myExperiment states) as includes (links to) the Pellet source code/binary. The workflow does not bundle Pellet, but it downloads it on demand.
Paper in Journal of Biomedical Semantics 2013, 4:37