ChEBI_mashup_from_searched_stringsearched_string00 A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint. 2010-04-29 08:59:19.368 EDT fructose 2010-04-29 09:07:24.575 EDT keto-d-fructose 2010-04-29 08:58:43.608 EDT fructose 2010-04-26 20:35:15.202 EDT search for fructose or keto-d-fructose or whatever you like. 2010-04-29 09:08:12.977 EDT 2010-04-29 08:59:28.436 EDT o1o2o3o4o5ntriplesChEBI_Describeparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://quebec.chebi.bio2rdf.org/wsdl ChEBI_Describe net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Describe_inputbm_uri0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Describe" name="parameters" qname="{services.wsdl}ChEBI_Describe"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="bm_uri" qname="&gt;ChEBI_Describe&gt;bm_uri" /></s:elements></s:complextype></s:extensions> false bm_uri 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Describe_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_DescribeResponse" name="parameters" qname="{services.wsdl}ChEBI_DescribeResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname="&gt;ChEBI_DescribeResponse&gt;CallReturn" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 CallReturn 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Linkparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://quebec.chebi.bio2rdf.org/wsdl ChEBI_Link net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Link_inputbm_uri0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Link" name="parameters" qname="{services.wsdl}ChEBI_Link"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="bm_uri" qname="&gt;ChEBI_Link&gt;bm_uri" /></s:elements></s:complextype></s:extensions> false bm_uri 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Link_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_LinkResponse" name="parameters" qname="{services.wsdl}ChEBI_LinkResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname="&gt;ChEBI_LinkResponse&gt;CallReturn" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 CallReturn 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Searchparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://quebec.chebi.bio2rdf.org/wsdl ChEBI_Search net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Search_inputquery_text0output00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_Search" name="parameters" qname="{services.wsdl}ChEBI_Search"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="query_text" qname="&gt;ChEBI_Search&gt;query_text" /></s:elements></s:complextype></s:extensions> false query_text 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_Search_outputinput0CallReturn00net.sf.taverna.t2.activitieswsdl-activity1.1net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="ChEBI_SearchResponse" name="parameters" qname="{services.wsdl}ChEBI_SearchResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CallReturn" qname="&gt;ChEBI_SearchResponse&gt;CallReturn" /></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 CallReturn 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringListMerge workflow java.lang.String true stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' 0 concatenated 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokentriples2subjectsntriples0bmuri_list11net.sf.taverna.t2.activitiesdataflow-activity1.1net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokentriples2subjects_2ntriples0bmuri_list11net.sf.taverna.t2.activitiesdataflow-activity1.1net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.FlattenList workflow [B true inputlist 2 l(l('')) 1 outputlist 1 l('') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringListMerge workflow java.lang.String true stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' 0 concatenated 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeChEBI_DescribeparametersChEBI_Describe_inputoutputChEBI_Describe_inputbm_uriFlatten_ListoutputlistChEBI_Describe_outputinputChEBI_DescribeparametersChEBI_LinkparametersChEBI_Link_inputoutputChEBI_Link_inputbm_urintriples2subjectsbmuri_listChEBI_Link_outputinputChEBI_LinkparametersChEBI_SearchparametersChEBI_Search_inputoutputChEBI_Search_inputquery_textsearched_stringChEBI_Search_outputinputChEBI_SearchparametersMerge_String_List_to_a_StringstringlistChEBI_Link_outputCallReturnntriples2subjectsntriplesChEBI_Search_outputCallReturnntriples2subjects_2ntriplesMerge_String_List_to_a_StringconcatenatedMerge_String_List_to_a_String_2stringlistChEBI_Describe_outputCallReturnFlatten_Listinputlistntriples2subjectsbmuri_listFlatten_Listinputlistntriples2subjects_2bmuri_listo1ChEBI_Search_outputCallReturno2ChEBI_Link_outputCallReturno3ntriples2subjects_2bmuri_listo4Flatten_Listoutputlisto5ChEBI_Describe_outputCallReturnntriplesMerge_String_List_to_a_String_2concatenated FrancoisBelleau@yahoo.ca member of the Bio2RDF community. 2010-04-29 09:03:38.521 EDT A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint. 2010-04-29 08:59:43.61 EDT ChEBI mashup from searched string 2010-04-26 23:56:32.655 EDT FracoisBelleau@yahoo.ca 2010-04-26 23:55:39.386 EDT A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint. First a full text search query is done, then we do a reverse link query to get all the related topic. Finally with a describe queries we obtain the complete graph of each topic. The ntriples result is a mashup of what is known about this searched topic form ChEBI. This graph can then be loaded in a triplestore for further exploration. 2010-04-29 09:03:13.128 EDT FrancoisBelleau@yahoo.ca 2010-04-29 09:00:23.700 EDT Workflow6ntriples00 <http://bio2rdf.org/chebi:4119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> . <http://bio2rdf.org/chebi:47424> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> . <http://bio2rdf.org/chebi:11175> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:549> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:18942> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:24855> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:5943> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:14459> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:4120> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> . <http://bio2rdf.org/chebi:12924> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> . <http://bio2rdf.org/chebi:2050> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:12119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:20563> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:12925> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:5173> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:4121> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:20932> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:22895> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:13915> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:3123> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:21290> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> . <http://bio2rdf.org/chebi:6216> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> . <http://bio2rdf.org/chebi:4124> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:12926> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:20935> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:24110> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:5172> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:24104> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:4122> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:20933> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:12351> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:42586> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:12923> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . <http://bio2rdf.org/chebi:4118> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . <http://bio2rdf.org/chebi:20929> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . 2010-04-26 23:16:38.28 EDT fructose 2010-04-26 20:35:15.202 EDT bmuri_listSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.SplitByRegex workflow java.lang.String true string 0 'text/plain' java.lang.String true regex 0 'text/plain' 1 split 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList workflow java.lang.String true stringlist 1 l('text/plain') java.lang.String true regex 0 'text/plain' java.lang.String true group 0 'text/plain' 1 filteredlist 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_subject_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity <(.*?)> <.* net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates workflow java.lang.String true stringlist 1 l('text/plain') 1 strippedlist 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregexeolvalueSplit_string_into_string_list_by_regular_expressionstringntriplesFilter_list_of_strings_extracting_match_to_a_regexstringlistSplit_string_into_string_list_by_regular_expressionsplitFilter_list_of_strings_extracting_match_to_a_regexgroup_1valueFilter_list_of_strings_extracting_match_to_a_regexregexget_subject_regexvalueRemove_String_DuplicatesstringlistFilter_list_of_strings_extracting_match_to_a_regexfilteredlistbmuri_listRemove_String_Duplicatesstrippedlist FrancoisBelleau@yahoo.ca 2010-04-26 23:19:14.542 EDT ntriples2subject___Extract_the_subject_list_from_ntriplesntriples00 <http://bio2rdf.org/chebi:4119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> . <http://bio2rdf.org/chebi:47424> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:48095> . <http://bio2rdf.org/chebi:11175> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:549> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:18942> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16715> . <http://bio2rdf.org/chebi:24855> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:5943> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:14459> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16751> . <http://bio2rdf.org/chebi:4120> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> . <http://bio2rdf.org/chebi:12924> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:16905> . <http://bio2rdf.org/chebi:2050> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:12119> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:20563> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17011> . <http://bio2rdf.org/chebi:12925> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:5173> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:4121> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:20932> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:18105> . <http://bio2rdf.org/chebi:22895> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:13915> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:3123> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:17618> . <http://bio2rdf.org/chebi:21290> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> . <http://bio2rdf.org/chebi:6216> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28120> . <http://bio2rdf.org/chebi:4124> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:12926> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:20935> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15946> . <http://bio2rdf.org/chebi:24110> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:5172> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:24104> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28757> . <http://bio2rdf.org/chebi:4122> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:20933> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:12351> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:42586> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:28602> . <http://bio2rdf.org/chebi:12923> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . <http://bio2rdf.org/chebi:4118> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . <http://bio2rdf.org/chebi:20929> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://bio2rdf.org/chebi:15824> . 2010-04-26 23:16:38.28 EDT fructose 2010-04-26 20:35:15.202 EDT bmuri_listSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.SplitByRegex workflow java.lang.String true string 0 'text/plain' java.lang.String true regex 0 'text/plain' 1 split 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList workflow java.lang.String true stringlist 1 l('text/plain') java.lang.String true regex 0 'text/plain' java.lang.String true group 0 'text/plain' 1 filteredlist 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_subject_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.1net.sf.taverna.t2.activities.stringconstant.StringConstantActivity <(.*?)> <.* net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.1net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates workflow java.lang.String true stringlist 1 l('text/plain') 1 strippedlist 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.1net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregexeolvalueSplit_string_into_string_list_by_regular_expressionstringntriplesFilter_list_of_strings_extracting_match_to_a_regexstringlistSplit_string_into_string_list_by_regular_expressionsplitFilter_list_of_strings_extracting_match_to_a_regexgroup_1valueFilter_list_of_strings_extracting_match_to_a_regexregexget_subject_regexvalueRemove_String_DuplicatesstringlistFilter_list_of_strings_extracting_match_to_a_regexfilteredlistbmuri_listRemove_String_Duplicatesstrippedlist FrancoisBelleau@yahoo.ca 2010-04-26 23:19:14.542 EDT ntriples2subject - Extract the subject list from ntriples 2010-04-26 23:19:53.822 EDT