Get_KEGG_gene_descriptions_and_pathwayskegg_gene_id_list11 Value 1 : "mmu:13163" Value 2 : "hsa:1616" 2010-04-30 16:49:35.89 CEST List of gene identifiers (from KEGG database). 2010-04-30 16:48:25.146 CEST mmu:13163 hsa:1616 2010-04-30 16:48:38.505 CEST gene_descriptions Gene identifiers and the corresponding definitions (from KEGG database). 2010-04-30 16:52:06.194 CEST "mmu:13163 Daxx; Fas death domain-associated protein; K02308 death-associated protein 6 hsa:1616 DAXX; death-domain associated protein; K02308 death-associated protein 6" 2010-04-30 16:52:13.849 CEST Gene identifiers and the corresponding descriptions (from KEGG database). Note : each line is a different couple gene id: description 2010-04-30 16:52:56.849 CEST pathway_descriptions "path:mmu04010 MAPK signaling pathway - Mus musculus (mouse) path:mmu05014 Amyotrophic lateral sclerosis (ALS) - Mus musculus (mouse)" 2010-04-30 16:53:23.225 CEST Pathway identifiers and the corresponding descriptions (from KEGG database). Note : each line is a different couple pathway id: description 2010-04-30 16:53:10.426 CEST btitstring0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://soap.genome.jp/KEGG.wsdl btit net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_pathways_by_genesgenes_id_list1return11net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://soap.genome.jp/KEGG.wsdl get_pathways_by_genes net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokelist_to_stringlist1string00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true list 1 text/plain 0 string 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebtit_2string0return00net.sf.taverna.t2.activitieswsdl-activity1.0.1net.sf.taverna.t2.activities.wsdl.WSDLActivity http://soap.genome.jp/KEGG.wsdl btit net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokelist_to_string_2list1string00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true list 1 text/plain 0 string 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebtitstringlist_to_stringstringget_pathways_by_genesgenes_id_listkegg_gene_id_listlist_to_stringlistkegg_gene_id_listbtit_2stringlist_to_string_2stringlist_to_string_2listget_pathways_by_genesreturngene_descriptionsbtitreturnpathway_descriptionsbtit_2return Get KEGG gene descriptions and pathways 2010-04-30 16:57:12.217 CEST This workflow gets takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identifiers separated by new lines. This workflow is a slight modification of one made by Paul Fisher called "Get Kegg Gene information". 2010-04-30 17:01:38.810 CEST This workflow gets takes a list (depth=1) of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). This workflow is a slight modification of one made by Paul Fisher called "Get Kegg Gene information". 2010-04-30 16:57:22.704 CEST Paul Fisher 2010-04-30 16:53:53.826 CEST Get Kegg Gene information 2010-04-30 16:54:11.865 CEST Paul Fisher (slightly modified by Nadia Cerezo) 2010-04-30 16:54:04.769 CEST This workflow gets takes a list (depth=1) of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). This workflow is a slight modification of one made by Paul Fisher called 2010-04-30 16:57:14.279 CEST This workflow gets takes a list (depth=1) of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). This workflow is a slight modification of one made by Paul Fisher calle 2010-04-30 16:56:57.842 CEST