BioMoby_tutorial_workflownamespace00 NCBI_gi 2010-07-04 17:44:30.945 BST The namespace of the identifier 2010-07-04 17:43:33.391 BST id00 656461 2010-07-04 17:43:21.263 BST An gene identifier 2010-07-04 17:43:16.581 BST A list of 2010-07-04 17:41:21.191 BST An id 2010-07-04 17:42:57.232 BST fasta_outmoby_blast_idsrestrict_outObjectnamespace0id0mobyData00net.sf.taverna.t2.activitiesbiomoby-activity1.2net.sf.taverna.t2.activities.biomoby.BiomobyObjectActivity http://moby.ucalgary.ca/moby/MOBY-Central.pl Object openinformatics.com net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetGenBankFastaObject(identifier)0FASTA(fasta)00net.sf.taverna.t2.activitiesbiomoby-activity1.2net.sf.taverna.t2.activities.biomoby.BiomobyActivity http://moby.ucalgary.ca/moby/MOBY-Central.pl getGenBankFasta bioinfo.icapture.ubc.ca net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeParse Moby Data(FASTA)mobyData('FASTA')0fasta_'content'11net.sf.taverna.t2.activitiesbiomoby-activity1.2net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivity FASTA http://moby.ucalgary.ca/moby/MOBY-Central.pl fasta net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseDragonDBBlastTextNCBI_BLAST_Text(blastreport)0Object(Collection - 'hit_ids')11net.sf.taverna.t2.activitiesbiomoby-activity1.2net.sf.taverna.t2.activities.biomoby.BiomobyActivity http://moby.ucalgary.ca/moby/MOBY-Central.pl parseDragonDBBlastText antirrhinum.net net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetDragonBlastTextFASTA(sequence)0NCBI_BLAST_Text(blast)00net.sf.taverna.t2.activitiesbiomoby-activity1.2net.sf.taverna.t2.activities.biomoby.BiomobyActivity http://moby.ucalgary.ca/moby/MOBY-Central.pl getDragonBlastText antirrhinum.net evalue 10 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerestrictsequence_direct_data0outfile00net.sf.taverna.t2.activitiessoaplab-activity1.2net.sf.taverna.t2.activities.soaplab.SoaplabActivity http://www.ebi.ac.uk/soaplab/services/nucleic_restriction.restrict 0 1.0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeObjectnamespacenamespaceObjectididgetGenBankFastaObject(identifier)ObjectmobyDataParse Moby Data(FASTA)mobyData('FASTA')getGenBankFastaFASTA(fasta)parseDragonDBBlastTextNCBI_BLAST_Text(blastreport)getDragonBlastTextNCBI_BLAST_Text(blast)getDragonBlastTextFASTA(sequence)getGenBankFastaFASTA(fasta)restrictsequence_direct_dataParse Moby Data(FASTA)fasta_'content'fasta_outParse Moby Data(FASTA)fasta_'content'moby_blast_idsparseDragonDBBlastTextObject(Collection - 'hit_ids')restrict_outrestrictoutfile fb218d56-b901-42bd-b3d1-ba8d44445818 2010-07-04 17:44:45.645 BST Eddie Kawas 2010-07-04 17:39:12.485 BST 3c41e289-6491-46a6-abdd-30b91bdba782 2010-07-04 17:33:20.481 BST BioMoby tutorial workflow 2010-07-04 17:39:27.212 BST 28441c35-894b-40b5-90f1-34422d9f6aec 2010-07-04 17:36:55.252 BST a34fa372-acb8-48f3-816a-06b9ce8f61af 2010-07-04 17:35:33.178 BST A workflow from part of the BioMoby tutorial 2010-07-04 17:39:46.556 BST ce5dac45-77d1-4f0a-b3bf-28934c1921eb 2010-07-04 17:31:38.230 BST 50903b96-8b77-485f-9655-a6f015c1ebd0 2010-07-04 17:24:20.232 BST