Biomart_and_BLAST_with_concatinated_idgene_idtranscript_exon_introntext_blast_outconcatinatedhsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_id10hsapiens_gene_ensembl.transcript_exon_intron10net.sf.taverna.t2.activitiesbiomart-activity1.2net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeblast_ddbjquery0program0database0Result00attachmentList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://xml.nig.ac.jp/wsdl/Blast.wsdl searchSimple net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeprogram_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity blastn net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedatabase_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity ddbjrod net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_gene_idstring20string10output00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringConcat workflow java.lang.String true string1 0 'text/plain' java.lang.String true string2 0 'text/plain' 0 output 0 UserNameHere 2010-12-13 13:55:22.583 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeblast_ddbjqueryhsapiens_gene_ensemblhsapiens_gene_ensembl.transcript_exon_intronblast_ddbjprogramprogram_valuevalueblast_ddbjdatabasedatabase_valuevalueConcatenate_gene_idstring2blast_ddbjResultConcatenate_gene_idstring1hsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idgene_idhsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idtranscript_exon_intronhsapiens_gene_ensemblhsapiens_gene_ensembl.transcript_exon_introntext_blast_outblast_ddbjResultconcatinatedConcatenate_gene_idoutput 7f513340-ecb1-421a-b36f-a75213cc2770 2010-12-13 10:59:53.83 GMT 1090dddf-e039-4641-bbe6-d5893fe1a168 2010-12-13 13:55:24.947 GMT Perform Rodent BLAST sequence alignments (using DDBJ Blast) on the gene sequences for a (semi-random) selection of genes from Human sapiens chromosome 22. (Using Biomart). Finally (to showcase Taverna pipelining) - the Ensembl gene ID is added as a prefix on the BLAST report. 2010-12-13 13:57:54.429 GMT c2776abd-fa2f-4c85-9dfa-7f0e2cb10946 2010-12-13 12:18:19.548 GMT df01dfe5-e026-470f-b9a1-5849e9e5d955 2010-12-13 11:31:48.521 GMT a163da90-b2f4-48db-bd77-3aa218e2c0cb 2010-12-13 10:52:24.320 GMT 8ae2e813-0114-4095-b601-26dc35cf6575 2010-12-13 11:32:27.267 GMT fdab284d-b086-4402-b6ff-e48892f56b36 2010-12-13 11:34:50.695 GMT 2555fab2-129e-40fc-b20a-045c2db0a801 2010-12-13 11:18:18.259 GMT d975324d-a4e1-4b44-aff4-e56cba470a77 2010-12-13 13:48:48.628 GMT Perform Rodent BLAST sequence alignments (using DDBJ Blast) on the gene sequences for a (semi-random) selection of genes from Human sapiens chromosome 22. (Using Biomart) 2010-12-13 12:18:19.405 GMT bee1e4a9-fe15-48ef-8c26-beeb2dfd5657 2010-12-13 13:50:48.61 GMT dfc03e12-a915-465b-bbc2-63cf4b5904d7 2010-12-13 11:10:53.794 GMT 64093471-ea7c-4f9d-9d73-1c57ea063cb0 2010-12-13 13:57:59.657 GMT Biomart and blast with concatinated id 2010-12-13 13:57:14.791 GMT Biomart and BLAST with concatinated id 2010-12-13 13:57:59.359 GMT 9b15c2b2-8b0b-4c4b-b4cb-937f3a102cc6 2010-12-13 11:08:51.652 GMT Stian Soiland-Reyes 2010-12-13 12:16:58.755 GMT e32b1d7f-3267-4531-805b-53c12488264c 2010-12-13 13:42:13.308 GMT d63d28d6-4a7a-44a8-83ba-881f5378bc0e 2010-12-13 11:05:38.216 GMT Perform Rodent BLAST sequence alignments (using DDBJ Blast) on the gene sequences for a (semi-random) selection of genes from Human sapiens chromosome 22. (Using Biomart) 2010-12-13 13:56:53.528 GMT c0883eff-a6de-4abd-a09c-36ed2c1ddbe4 2010-12-13 11:25:04.77 GMT 2010-12-13 13:56:51.418 GMT 287bf196-766e-41d2-af03-91847a3ec2a2 2010-12-13 11:05:22.475 GMT 0c9a02ab-23da-4a1e-bdc8-852bbfb84820 2010-12-13 11:45:11.361 GMT b2a70592-326f-431e-92da-3c9ab6ee1bd8 2010-12-13 10:55:15.580 GMT