localshapeper-vertexradialdisplacementhttp://www.loni.ucla.edu/twiki/bin/view/CCB/PipelineWorkflows_LSA645000-0.50.5listutilitypipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/LocalShapeAnalysis/create_list.pylistutilitypipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/LocalShapeAnalysis/create_list.py-0.50.5translationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jarrigidtransformhttp://www.loni.ucla.edu/twiki/bin/view/CCB/RigidQuaternionTransformpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20100331/RigidQuaternionTransform.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jar21rigidtransformhttp://www.loni.ucla.edu/twiki/bin/view/CCB/RigidQuaternionTransformpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20100331/RigidQuaternionTransform.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jar21listutilitypipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/LocalShapeAnalysis/create_list.pylistutilitypipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/LocalShapeAnalysis/create_list.py5000-0.50.5-0.50.5hdrpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_1_time_0.img3e-5hdrpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_1_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_2_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_3_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_4_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_5_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_F_6_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_M_1_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_M_2_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_M_3_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_M_4_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/AD_M_5_time_0.img100000.20.20.210100.030242hdr2//idaxs/project/subject/study/weightKg21ValueValue//idaxs/project/subject/subjectIdentifier//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']1e-41e-853150002000001//idaxs/project/subject/study/weightKgValue//idaxs/project/subject/subjectIdentifierValue//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']1e-41e-853150002000001//idaxs/project/subject/study/weightKgValueValue//idaxs/project/subject/subjectIdentifier//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']rigidtransformhttp://www.loni.ucla.edu/twiki/bin/view/CCB/RigidQuaternionTransformpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20100331/RigidQuaternionTransform.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jar21-crosscorloc-crosscor-foe-foeloc-crosscorloc1e-41e-853150002000001//idaxs/project/subject/study/weightKgValue//idaxs/project/subject/subjectIdentifierValue//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']1e-41e-853150002000001rigidtransformhttp://www.loni.ucla.edu/twiki/bin/view/CCB/RigidQuaternionTransformpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20100331/RigidQuaternionTransform.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jartranslationmeshtrianglesconverthttp://www.loni.ucla.edu/twiki/bin/view/CCB/ShapeTranslatorpipeline://cranium.loni.ucla.edu//usr/local/ShapeTools-20090513/ShapeTranslator.jar21-crosscorloc-crosscor-foe-foeloc-crosscorloc100000.20.20.210100.030242hdr2//idaxs/project/subject/study/weightKg21ValueValue//idaxs/project/subject/subjectIdentifier//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']100000.20.20.210100.030242hdr2//idaxs/project/subject/study/weightKg21ValueValue//idaxs/project/subject/subjectIdentifier//idaxs/project/subject/subjectSex//idaxs/project/subject/visit/assessment[@name='CDR']/component[@name='CDR Total Score']/assessmentScore[@attribute='CDGLOBAL']//idaxs/project/subject/visit/assessment[@name='MMSE']/component[@name='MMSE Total Score']/assessmentScore[@attribute='MMSCORE']pipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/displacementfeature_pmap.mhdr{label}hdrhdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_F_1_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_F_2_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_F_3_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_F_4_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_F_5_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_M_1_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_M_2_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_M_3_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_M_4_time_0.imgpipeline://cranium.loni.ucla.edu//usr/local/loniData-1.0-1_64bit/Pipeline_Workflow_Test_Data/LocalShapeAnalysis/NC_M_5_time_0.imgrotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/bet2/index.htmlhdr0.820115110115110deformable registrationb-splinehttp://www.itk.org/index.htmlhdrDeformation Fieldpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imghdrDeformation Field0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/12.0rotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursincnearestneighbour6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanhttp://www.loni.ucla.edu/twiki/bin/view/Main/ZhuowenTu0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure12.0hdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrconvertanalyzebitshttp://loni.ucla.eduhdr0816328Invert the XML Alignment FieldApply Inverse Warping to Labels
to bring results back in native data spacedeformation fieldwarpb-splinehttp://www.itk.org/index.htmlhdrdeformable registrationb-splinehttp://www.itk.org/index.htmlhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imgApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursinc6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanrotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/bet2/index.htmlhdr0.820115110115110deformable registrationb-splinehttp://www.itk.org/index.htmlhdrDeformation Fieldpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imghdrDeformation Field0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/12.0rotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursincnearestneighbour6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanhttp://www.loni.ucla.edu/twiki/bin/view/Main/ZhuowenTu0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure12.0hdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrconvertanalyzebitshttp://loni.ucla.eduhdr0816328Invert the XML Alignment FieldApply Inverse Warping to Labels
to bring results back in native data spacedeformation fieldwarpb-splinehttp://www.itk.org/index.htmlhdrdeformable registrationb-splinehttp://www.itk.org/index.htmlhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imgApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursinc6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanrotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/bet2/index.htmlhdr0.820115110115110deformable registrationb-splinehttp://www.itk.org/index.htmlhdrDeformation Fieldpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imghdrDeformation Field0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/12.0rotatemirror imagehttp://bishopw.loni.ucla.edu/AIR5/reorient.htmlhdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursincnearestneighbour6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanhttp://www.loni.ucla.edu/twiki/bin/view/Main/ZhuowenTu0122010hdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure12.0hdrhttp://www.fmrib.ox.ac.uk/fsl/hdrhdrconvertanalyzebitshttp://loni.ucla.eduhdr0816328Invert the XML Alignment FieldApply Inverse Warping to Labels
to bring results back in native data spacedeformation fieldwarpb-splinehttp://www.itk.org/index.htmlhdrdeformable registrationb-splinehttp://www.itk.org/index.htmlhttp://www.fmrib.ox.ac.uk/fsl/flirt/index.htmlhdrhdrpipeline://cranium.loni.ucla.edu//usr/local/loniWorkflows/BrainParser/56_Structure/appearance/0000.brain.imgApply XFMcharshortintfloatdoubleshortmutualinfocorrationormcorrnormmileastsqmutualinfocorrationormcorrnormmileastsqquaternioneulertrilinearnearestneighboursinc6791212Padding SizeInitial Matrix FileApply XFMhdrhdrrectangularhanningblackmanpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/radialdistance_pmap.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_0.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_1.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_2.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_3.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_4.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_5.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_6.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_7.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_8.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_9.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_radialdistance_10.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_0.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_1.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_2.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_3.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_4.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_5.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_6.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_7.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_8.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_radialdistance_9.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_0.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_1.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_2.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_3.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_4.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_5.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_6.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_7.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_8.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_9.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group1_displacementfeature_10.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_0.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_1.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_2.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_3.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_4.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_5.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_6.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_7.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_8.mpipeline://cranium.loni.ucla.edu//ifs/tmp/{$username}/lsa/group2_displacementfeature_9.m21