Find_Reactome_pathways_and_reactions_by_GOGO_accession00 0006915 2011-05-29 19:31:46.505 CEST Use a GO (Gene Ontology) accession. Do not forget to leave out the GO prefix, so you do not input "GO:0006915" but "0006915" instead. To find GO accessions and browse the GO you can use Amigo ... http://amigo.geneontology.org/cgi-bin/amigo/browse.cgi ... or the OLS ... http://www.ebi.ac.uk/ontology-lookup/ 2011-05-29 19:36:11.48 CEST pathway_namestable_identifierreaction_namereaction_identifierpathwaypathway.gobiologicalprocess_accession_filter0pathway.species_selection_filter0pathway._displayname10pathway.stableidentifier_identifier10pathway.reaction__dm__displayname10pathway.reaction__dm_stableidentifier_identifier10net.sf.taverna.t2.activitiesbiomart-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokespecies_selectionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.stringconstant.StringConstantActivity Homo sapiens net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokepathwaypathway.gobiologicalprocess_accession_filterGO_accessionpathwaypathway.species_selection_filterspecies_selectionvaluepathway_namepathwaypathway._displaynamestable_identifierpathwaypathway.stableidentifier_identifierreaction_namepathwaypathway.reaction__dm__displaynamereaction_identifierpathwaypathway.reaction__dm_stableidentifier_identifier 8db38f96-ea55-4810-81c0-941ab71ae2ae 2011-05-29 19:19:48.209 CEST 812c7905-6a7b-423c-8e1e-0b02a9f6e7bf 2011-05-29 19:26:24.126 CEST b31f8a60-dd4a-4c5a-9a55-ea001df4e49d 2011-05-29 19:41:53.539 CEST Rafael C. Jimenez 2011-05-29 19:41:49.614 CEST de560b68-b6d7-4789-88e5-89a719898f07 2011-05-29 19:22:07.663 CEST Find Reactome pathways and reactions (names and accessions) in Human querying by a Gene Ontology term. This is an example of how to use the Reactome Biomart service in Taverna. Many other possibilities are possible by modifying the filters and attributes options of the service. 2011-05-29 19:41:14.330 CEST 2eeba4e1-102c-4608-849b-1991a5d48844 2011-05-29 19:29:16.241 CEST 8d3e0867-cf30-4cb1-81c5-dfdaab1b75f6 2011-05-29 19:30:46.948 CEST Find Reactome pathways and reactions by GO 2011-05-29 19:41:23.926 CEST c0d01119-872a-4e5d-92b8-5bcd559fa8ea 2011-05-29 19:57:23.570 CEST