MultiparametersensitivityanalysisMPSAparamXmlList
text/plain
2011-06-29 16:40:16.444 CEST
ecdfPlotList
application/octet-stream
2011-06-29 16:40:16.445 CEST
paramRankingXmlList
text/xml
2011-06-29 16:40:16.445 CEST
sampleXmlListsampleErrorListsampleErrorThresholdparamCsvvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
k1.k, k3.k
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemodelUrlvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
http://bioputer.mimuw.edu.pl/tav4sb/models/enzyme.xml
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesamplesNrvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
400
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesimTimevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
30
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeerrorVarCsvvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
m4
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokethresholdMethodvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
median
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesimTimepointsNrvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
11
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeClassifySamplesmethod0sampleErrorList1sampleList1acceptableSampleList11unacceptableSampleList11errorThreshold00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesetParamsRangemultiplier0paramXmlList1paramListXml00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
paramXmlList
1
l('text/xml')
java.lang.String
true
multiplier
0
'text/plain'
0
paramListXml
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetModelfileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
net.sourceforge.taverna.scuflworkers.io.TextFileReader
workflow
java.lang.String
true
fileurl
0
'text/plain'
0
filecontents
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelectParametersparamNameCsv0modelXml0paramNameList11paramXmlList11net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCalculateSensitivityacceptableSampleXmlList1ifGeneratePlots0unacceptableSampleXmlList1paramXmlList1paramRankingXmlList11plotList11net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGenerateSamplesdistribution0scale0nr0paramListXml0method0rangeMultiplier0sampleXmlList11net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCalculateSamplesError_OdeSimerrVarCsv0sampleXmlList1modelXml0simtp0simt0ignoredVarList11sampleErrorList11selectedVarList11net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerangeMulvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
4
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeifGeneratePlotsvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
true
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedistributionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
uniform
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesamplingMethodvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
LHS
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokescalevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
LIN
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeClassifySamplesmethodClassifySamplessampleErrorListClassifySamplessampleListsetParamsRangemultipliersetParamsRangeparamXmlListgetModelfileurlSelectParametersparamNameCsvSelectParametersmodelXmlCalculateSensitivityacceptableSampleXmlListCalculateSensitivityifGeneratePlotsCalculateSensitivityunacceptableSampleXmlListCalculateSensitivityparamXmlListGenerateSamplesdistributionGenerateSamplesscaleGenerateSamplesnrGenerateSamplesparamListXmlGenerateSamplesmethodGenerateSamplesrangeMultiplierCalculateSamplesError_OdeSimerrVarCsvCalculateSamplesError_OdeSimsampleXmlListCalculateSamplesError_OdeSimmodelXmlCalculateSamplesError_OdeSimsimtpCalculateSamplesError_OdeSimsimtparamXmlListecdfPlotListparamRankingXmlListsampleXmlListsampleErrorListsampleErrorThreshold
a18b5167-ead7-4018-87c9-e4c89149bd75
2011-06-30 12:06:16.802 CEST
2011-06-29 16:40:17.323 CEST
e8106a16-5a94-4de6-8871-b7d56f72dc3e
2011-06-29 16:46:17.140 CEST
d8176921-e747-4d86-8a72-7a6ff5341ec8
2011-06-30 11:46:48.596 CEST
a034afc2-7151-41b4-9503-b856bbcb552a
2011-06-30 12:17:04.395 CEST
Multi-parameter sensitivity analysis (MPSA)
2011-06-29 16:40:17.323 CEST
c9476b51-c9bc-4a3d-852f-498a72a03587
2011-07-01 11:48:12.339 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.323 CEST
4330514f-e84e-4541-914d-c6147e076a5d
2011-07-01 11:49:44.225 CEST
dfcd9f77-3be7-402c-a288-de651a8e008b
2011-06-30 11:35:52.562 CEST
80ac5371-2d72-4806-950c-466bbe8e1d5e
2011-06-29 16:41:14.164 CEST
9e1e1092-4817-47fb-8cc1-86a1f4fd5f61
2011-06-30 11:41:17.612 CEST
69dabc0a-5eb2-4486-8388-8709bbacc987
2011-06-29 16:54:12.930 CEST
86e61168-2e32-4196-9b07-36975e16883e
2011-06-29 16:41:48.308 CEST
b421842e-f4d0-448c-9dfd-d1886a9be422
2011-07-01 11:27:23.642 CEST
pointXmltolistofargumentsvaluespairsofcoordinatesvalueslistargNameList11
text/plain
2011-06-29 16:40:17.182 CEST
Coordinates' names list.
Example value:
z
y
2011-06-29 16:40:17.182 CEST
pointListXml00
pointListXml, i.e. list of <point> elements with list of <coordinate @name="name"> elements.
Note: point list, point and coordinate tag names are ignored, only the structure and "name" attribute are important.
Example value:
<pointList>
<point>
<coordinate name="v">v1</coordinate>
<coordinate name="x">x1</coordinate>
<coordinate name="y">y1</coordinate>
</point>
<point>
<coordinate name="v">v2</coordinate>
<coordinate name="x">x2</coordinate>
<coordinate name="y">y2</coordinate>
<coordinate name="y">ERR</coordinate>
<coordinate name="z">z2</coordinate>
</point>
<point>
<coordinate name="z">z3</coordinate>
<coordinate name="v">v3</coordinate>
<coordinate name="x">x3</coordinate>
<coordinate name="y">y3</coordinate>
</point>
</pointList>
2011-06-29 16:40:17.182 CEST
text/xml
2011-06-29 16:40:17.182 CEST
valNameList11
2011-06-29 16:40:17.182 CEST
text/plain
2011-06-29 16:40:17.182 CEST
argsValsListList
text/plain
2011-06-29 16:40:17.182 CEST
transposelist3transposedList33net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list
3
l(l(l('text/plain')))
3
transposedList
3
l(l(l('text/plain')))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepointListXmlToValuesListListpointListXml0coordinateNameList1coordinateValueListList22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
coordinateNameList
1
l('text/plain')
java.lang.String
true
pointListXml
0
'text/xml'
2
coordinateValueListList
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepairOfListslist21list11listsPair22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
2
listsPair
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketransposelistpointListXmlToValuesListListpointListXmlpointListXmlToValuesListListcoordinateNameListpairOfListslist2pairOfListslist1argsValsListList
b4158102-b575-4357-9a4a-a139d6c848b6
2011-06-29 16:41:14.465 CEST
Extracts pointListXml coordinates values by given coordinates' names of arguments and values. Preserve values order according to names order. Ignores duplicate coordinates, i.e. takes only first coordinate if coordinate name is not unique in pointXml. For missing coordinates a "NA" value is returned.
2011-06-29 16:40:17.215 CEST
pointXml to list of arguments-values pairs of coordinates values list
2011-06-29 16:40:17.215 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.215 CEST
odeSolverWebservicemodel00
text/plain
2011-06-29 16:40:17.295 CEST
SBML model file content.
Example value:
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
<model id="Reaction" name="Single reaction">
<listOfUnitDefinitions>
<unitDefinition id="substance" name="moles">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M" name="M">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M_per_second" name="M/s">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="sec_inv" name="1/s">
<listOfUnits>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="s" name="solution" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="S" name="Substrate" compartment="s" initialConcentration="10"/>
<species id="P" name="Product" compartment="s" initialConcentration="0"/>
</listOfSpecies>
<listOfReactions>
<reaction id="r1" name="Substrate conversion" reversible="false">
<listOfReactants>
<speciesReference species="S"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="P"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k </ci>
<ci> S </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>
2011-06-29 16:40:17.295 CEST
simt00
text/plain
2011-06-29 16:40:17.295 CEST
Simulation end time in abstract time units (whatever time scale model is using).
Example value:
30
2011-06-29 16:40:17.295 CEST
simtp00
Time points to print in simulation. By default each integer time point (value of the 'simt' parameter).
Example value:
10
2011-06-29 16:40:17.295 CEST
text/plain
2011-06-29 16:40:17.295 CEST
atol00
text/plain
2011-06-29 16:40:17.295 CEST
Absolute error tolerance used during ODEs integration. By default 1e-12.
Example value:
1e-12
2011-06-29 16:40:17.295 CEST
rtol00
Relative error tolerance used during ODEs integration. By default 1e-6.
Example value:
1e-6
2011-06-29 16:40:17.295 CEST
text/plain
2011-06-29 16:40:17.295 CEST
sensitivityAnalysis00
Currently not used. Flag indicating whether to activate sensitivity analysis. By default false.
Example value:
false
2011-06-29 16:40:17.295 CEST
text/plain
2011-06-29 16:40:17.295 CEST
error
text/plain
2011-06-29 16:40:17.295 CEST
timepointsXml
text/xml
2011-06-29 16:40:17.296 CEST
variablesList
text/plain
2011-06-29 16:40:17.296 CEST
odeSolverodeSolverParams0odeSolverResult00attachmentList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://bioputer.mimuw.edu.pl/tav4sb/services/wsdl
odeSolver
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokevariablesNamesXPathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
//variable/@name
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetVariablesNamesxpath0xml-text0nodelistAsXML11nodelist11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverResultXMLinput0error00trajectories00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverResult" name="odeSolverResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverResult"><s:elements><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="error" qname=">odeSolverResult>error" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
trajectories
0
'text/xml'
0
error
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverParamsXMLatol0model0simtp0simt0sensitivityAnalysis0rtol0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverParams" name="odeSolverParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverParams"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="model" qname=">odeSolverParams>model" /><s:basetype optional="false" unbounded="false" typename="decimal" name="simt" qname=">odeSolverParams>simt" /><s:basetype optional="true" unbounded="false" typename="decimal" name="simtp" qname=">odeSolverParams>simtp" /><s:basetype optional="true" unbounded="false" typename="decimal" name="atol" qname=">odeSolverParams>atol" /><s:basetype optional="true" unbounded="false" typename="decimal" name="rtol" qname=">odeSolverParams>rtol" /><s:basetype optional="true" unbounded="false" typename="boolean" name="sensitivityAnalysis" qname=">odeSolverParams>sensitivityAnalysis" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
model
0
'text/plain'
java.lang.String
true
simt
0
'text/plain'
java.lang.String
true
simtp
0
'text/plain'
java.lang.String
true
atol
0
'text/plain'
java.lang.String
true
rtol
0
'text/plain'
java.lang.String
true
sensitivityAnalysis
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketrajectoriesXMLinput0variables00timepoints00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
variables
0
'text/xml'
0
timepoints
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverodeSolverParamsgetVariablesNamesxpathgetVariablesNamesxml-textodeSolverResultXMLinputodeSolverParamsXMLatolodeSolverParamsXMLmodelodeSolverParamsXMLsimtpodeSolverParamsXMLsimtodeSolverParamsXMLsensitivityAnalysisodeSolverParamsXMLrtoltrajectoriesXMLinputerrortimepointsXmlvariablesList
fe40925a-a50a-4881-a8dd-9d5decfc37ca
2011-06-29 16:41:14.735 CEST
SBML ODE Solver Library (http://www.tbi.univie.ac.at/~raim/odeSolver/) Web service.
2011-06-29 16:40:17.316 CEST
odeSolver Web service
2011-06-29 16:40:17.316 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.316 CEST
sampleParamsWebserviceoperationdistribution00
2011-06-29 16:40:17.136 CEST
text/plain
2011-06-29 16:40:17.136 CEST
method00
text/plain
2011-06-29 16:40:17.136 CEST
2011-06-29 16:40:17.136 CEST
nr00
2011-06-29 16:40:17.136 CEST
text/plain
2011-06-29 16:40:17.136 CEST
paramListXml00
text/xml
2011-06-29 16:40:17.136 CEST
2011-06-29 16:40:17.136 CEST
scale00
text/plain
2011-06-29 16:40:17.136 CEST
2011-06-29 16:40:17.136 CEST
rangeMultiplier00
text/plain
2011-06-29 16:40:17.136 CEST
2011-06-29 16:40:17.136 CEST
sampleXmlList
text/xml
2011-06-29 16:40:17.136 CEST
sampleParamssampleParamsParams0attachmentList11sampleParamsResult00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://bioputer.mimuw.edu.pl/tav4sb/services/wsdl
sampleParams
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampleListXml2sampleXmlListinput0sampleList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">sampleParamsResult>sampleList"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfstring" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:extensions>
java.lang.String
true
input
0
'text/xml'
1
sampleList
1
l('text/xml')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampleParamsResultinput0sampleList00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="sampleParamsResult" name="sampleParamsResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}sampleParamsResult"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">sampleParamsResult>sampleList"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfstring" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
sampleList
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampleParamsParamsXMLmethod0paramList0scale0nr0distribution0rangeMultiplier0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="sampleParamsParams" name="sampleParamsParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}sampleParamsParams"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="distribution" qname=">sampleParamsParams>distribution" /><s:basetype optional="false" unbounded="false" typename="string" name="method" qname=">sampleParamsParams>method" /><s:basetype optional="false" unbounded="false" typename="int" name="nr" qname=">sampleParamsParams>nr" /><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfParam" name="paramList" qname=">sampleParamsParams>paramList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="param" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}param"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="scale" qname=">sampleParamsParams>scale" /><s:basetype optional="true" unbounded="false" typename="decimal" name="rangeMultiplier" qname=">sampleParamsParams>rangeMultiplier" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
distribution
0
'text/plain'
java.lang.String
true
method
0
'text/plain'
java.lang.String
true
nr
0
'text/plain'
java.lang.String
true
paramList
0
'text/xml'
java.lang.String
true
scale
0
'text/plain'
java.lang.String
true
rangeMultiplier
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampleParamssampleParamsParamssampleListXml2sampleXmlListinputsampleParamsResultinputsampleParamsParamsXMLmethodsampleParamsParamsXMLparamListsampleParamsParamsXMLscalesampleParamsParamsXMLnrsampleParamsParamsXMLdistributionsampleParamsParamsXMLrangeMultipliersampleXmlList
2011-06-29 16:40:17.148 CEST
sampleParams Web service operation
2011-06-29 16:40:17.148 CEST
4ee748a4-c1ef-4576-bcf4-a773036c19f2
2011-06-29 16:41:14.964 CEST
Paweł Banasik
2011-06-29 16:40:17.148 CEST
odeSolverWebservicemodel00
text/plain
2011-06-29 16:40:17.272 CEST
SBML model file content.
Example value:
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
<model id="Reaction" name="Single reaction">
<listOfUnitDefinitions>
<unitDefinition id="substance" name="moles">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M" name="M">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="M_per_second" name="M/s">
<listOfUnits>
<unit kind="mole" scale="1" multiplier="1" offset="0"/>
<unit kind="litre" exponent="-1" multiplier="1" offset="0"/>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="sec_inv" name="1/s">
<listOfUnits>
<unit kind="second" exponent="-1" multiplier="1" offset="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="s" name="solution" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="S" name="Substrate" compartment="s" initialConcentration="10"/>
<species id="P" name="Product" compartment="s" initialConcentration="0"/>
</listOfSpecies>
<listOfReactions>
<reaction id="r1" name="Substrate conversion" reversible="false">
<listOfReactants>
<speciesReference species="S"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="P"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k </ci>
<ci> S </ci>
</apply>
</math>
<listOfParameters>
<parameter id="k" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>
2011-06-29 16:40:17.272 CEST
simt00
Simulation end time in abstract time units (whatever time scale model is using).
Example value:
30
2011-06-29 16:40:17.272 CEST
text/plain
2011-06-29 16:40:17.272 CEST
simtp00
Time points to print in simulation. By default each integer time point (value of the 'simt' parameter).
Example value:
10
2011-06-29 16:40:17.272 CEST
text/plain
2011-06-29 16:40:17.272 CEST
atol00
Absolute error tolerance used during ODEs integration. By default 1e-12.
Example value:
1e-12
2011-06-29 16:40:17.272 CEST
text/plain
2011-06-29 16:40:17.272 CEST
rtol00
Relative error tolerance used during ODEs integration. By default 1e-6.
Example value:
1e-6
2011-06-29 16:40:17.272 CEST
text/plain
2011-06-29 16:40:17.272 CEST
sensitivityAnalysis00
Currently not used. Flag indicating whether to activate sensitivity analysis. By default false.
Example value:
false
2011-06-29 16:40:17.272 CEST
text/plain
2011-06-29 16:40:17.272 CEST
error
text/plain
2011-06-29 16:40:17.272 CEST
timepointsXml
text/xml
2011-06-29 16:40:17.272 CEST
variablesList
text/plain
2011-06-29 16:40:17.272 CEST
variablesNamesXPathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
//variable/@name
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverodeSolverParams0odeSolverResult00attachmentList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://bioputer.mimuw.edu.pl/tav4sb/services/wsdl
odeSolver
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetVariablesNamesxpath0xml-text0nodelistAsXML11nodelist11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverParamsXMLsensitivityAnalysis0rtol0simtp0model0atol0simt0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverParams" name="odeSolverParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverParams"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="model" qname=">odeSolverParams>model" /><s:basetype optional="false" unbounded="false" typename="decimal" name="simt" qname=">odeSolverParams>simt" /><s:basetype optional="true" unbounded="false" typename="decimal" name="simtp" qname=">odeSolverParams>simtp" /><s:basetype optional="true" unbounded="false" typename="decimal" name="atol" qname=">odeSolverParams>atol" /><s:basetype optional="true" unbounded="false" typename="decimal" name="rtol" qname=">odeSolverParams>rtol" /><s:basetype optional="true" unbounded="false" typename="boolean" name="sensitivityAnalysis" qname=">odeSolverParams>sensitivityAnalysis" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
model
0
'text/plain'
java.lang.String
true
simt
0
'text/plain'
java.lang.String
true
simtp
0
'text/plain'
java.lang.String
true
atol
0
'text/plain'
java.lang.String
true
rtol
0
'text/plain'
java.lang.String
true
sensitivityAnalysis
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverResultXMLinput0error00trajectories00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="odeSolverResult" name="odeSolverResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}odeSolverResult"><s:elements><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="error" qname=">odeSolverResult>error" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
trajectories
0
'text/xml'
0
error
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketrajectoriesXMLinput0variables00timepoints00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="Trajectories" name="trajectories" qname=">odeSolverResult>trajectories"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfVariable" name="variables" qname="Trajectories>variables"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Variable" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}Variable"><s:elements /></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfTimepointValues" name="timepoints" qname="Trajectories>timepoints"><s:elementtype><s:complextype optional="false" unbounded="false" typename="TimepointValues" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}TimepointValues"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="time" qname="TimepointValues>time" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="FiniteValue" name="variable" qname="TimepointValues>variable"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="FiniteValue" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/odesolver}FiniteValue" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
variables
0
'text/xml'
0
timepoints
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeodeSolverodeSolverParamsgetVariablesNamesxpathgetVariablesNamesxml-textodeSolverParamsXMLsensitivityAnalysisodeSolverParamsXMLrtolodeSolverParamsXMLsimtpodeSolverParamsXMLmodelodeSolverParamsXMLatolodeSolverParamsXMLsimtodeSolverResultXMLinputtrajectoriesXMLinputerrortimepointsXmlvariablesList
0a55bed7-1e26-4abd-be4d-d90e3148af7a
2011-06-29 16:41:15.54 CEST
SBML ODE Solver Library (http://www.tbi.univie.ac.at/~raim/odeSolver/) Web service.
2011-06-29 16:40:17.293 CEST
odeSolver Web service
2011-06-29 16:40:17.293 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.293 CEST
calcSensitivityWebserviceoperationparamXmlList11
2011-06-29 16:40:17.31 CEST
text/plain
2011-06-29 16:40:17.31 CEST
acceptableSampleXmlList11
text/plain
2011-06-29 16:40:17.31 CEST
2011-06-29 16:40:17.31 CEST
text/xml
2011-06-29 16:40:17.31 CEST
unacceptableSampleXmlList11
text/xml
2011-06-29 16:40:17.31 CEST
2011-06-29 16:40:17.31 CEST
text/plain
2011-06-29 16:40:17.31 CEST
ifGeneratePlots00
text/plain
2011-06-29 16:40:17.31 CEST
2011-06-29 16:40:17.31 CEST
paramRankingXmlList
text/xml
2011-06-29 16:40:17.31 CEST
plotList
image/png
2011-06-29 16:40:17.31 CEST
application/octet-stream
2011-06-29 16:40:17.31 CEST
sampleXmlList2sampleListXmlsampleXmlList1sampleListXml00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sampleXmlList
1
l('text/plain')
0
sampleListXml
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketoPairlist11list21listsPair22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
2
listsPair
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefromPairpair1el100el200net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pair
1
l('text/plain')
0
el1
0
'text/plain'
0
el2
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparamXmlList2selectedParamsXmlparamXmlList1selectedParamsXml00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
paramXmlList
1
l('text/plain')
0
selectedParamsXml
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalcSensitivitycalcSensitivityParams0calcSensitivityResult00attachmentList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://bioputer.mimuw.edu.pl/tav4sb/services/wsdl
calcSensitivity
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDecode_base64_to_bytebase640bytes00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.DecodeBase64
commons-codec:commons-codec:1.3
workflow
commons-codec
commons-codec
1.3
1635363350
java.lang.String
true
base64
0
'text/plain'
0
bytes
0
'application/octet-stream'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerankingListXMLinput0rankingList11net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfParamRanking" name="rankingList" qname=">calcSensitivityResult>rankingList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="ParamRanking" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}ParamRanking"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="name" qname="ParamRanking>name" /><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="paramSortedList" qname="ParamRanking>paramSortedList"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:extensions>
java.lang.String
true
input
0
'text/xml'
1
rankingList
1
l('text/xml')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeunacceptableSamplesXMLsampleList0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename=">>calcSensitivityParams>unacceptableSamples" name="unacceptableSamples" qname=">calcSensitivityParams>unacceptableSamples"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">>calcSensitivityParams>unacceptableSamples>sampleList"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfstring" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
sampleList
0
'text/xml'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeacceptableSamplesXMLsampleList0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename=">>calcSensitivityParams>acceptableSamples" name="acceptableSamples" qname=">calcSensitivityParams>acceptableSamples"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">>calcSensitivityParams>acceptableSamples>sampleList"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfstring" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
sampleList
0
'text/xml'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalcSensitivityResultXMLinput0ecdfPlotList11rankingList00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="calcSensitivityResult" name="calcSensitivityResult" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}calcSensitivityResult"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfParamRanking" name="rankingList" qname=">calcSensitivityResult>rankingList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="ParamRanking" name="" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}ParamRanking"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="name" qname="ParamRanking>name" /><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="sortedParamList" qname="ParamRanking>sortedParamList"><s:elementtype><s:basetype optional="false" unbounded="false" typename="decimal" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="false" wrapped="true" typename="ArrayOfPlot" name="ecdfPlotList" qname=">calcSensitivityResult>ecdfPlotList"><s:elementtype><s:basetype optional="false" unbounded="false" typename="base64Binary" name="Plot" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}Plot" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
rankingList
0
'text/xml'
1
ecdfPlotList
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalcSensitivityParamsXMLgeneratePlots0selectedParams0unacceptableSamples0acceptableSamples0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="calcSensitivityParams" name="calcSensitivityParams" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}calcSensitivityParams"><s:elements><s:complextype optional="false" unbounded="false" typename="paramList" name="selectedParams" qname=">calcSensitivityParams>selectedParams"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="paramList" qname="paramList>paramList"><s:elementtype><s:basetype optional="false" unbounded="false" typename="decimal" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename=">>calcSensitivityParams>acceptableSamples" name="acceptableSamples" qname=">calcSensitivityParams>acceptableSamples"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">>calcSensitivityParams>acceptableSamples>sampleList"><s:elementtype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfdecimal" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam"><s:elementtype><s:basetype optional="false" unbounded="false" typename="decimal" name="NewParam" qname="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewParam" /></s:elementtype></s:arraytype></s:elementtype></s:arraytype></s:elements></s:complextype><s:complextype optional="false" unbounded="false" typename=">>calcSensitivityParams>unacceptableSamples" name="unacceptableSamples" qname=">calcSensitivityParams>unacceptableSamples"><s:elements><s:arraytype optional="false" unbounded="false" wrapped="true" typename="NewArrayOfSample" name="sampleList" qname=">>calcSensitivityParams>unacceptableSamples>sampleList"><s:elementtype><s:arraytype id="{http://bioputer.mimuw.edu.pl/tav4sb/services/xsd/mathematica}NewArrayOfParam" optional="false" unbounded="false" wrapped="true" typename="NewArrayOfParam" name="ArrayOfdecimal" /></s:elementtype></s:arraytype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="boolean" name="generatePlots" qname=">calcSensitivityParams>generatePlots" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
selectedParams
0
'text/xml'
java.lang.String
true
acceptableSamples
0
'text/xml'
java.lang.String
true
unacceptableSamples
0
'text/xml'
java.lang.String
true
generatePlots
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesampleXmlList2sampleListXmlsampleXmlListtoPairlist1toPairlist2fromPairpairparamXmlList2selectedParamsXmlparamXmlListcalcSensitivitycalcSensitivityParamsDecode_base64_to_bytebase64rankingListXMLinputunacceptableSamplesXMLsampleListacceptableSamplesXMLsampleListcalcSensitivityResultXMLinputcalcSensitivityParamsXMLgeneratePlotscalcSensitivityParamsXMLselectedParamscalcSensitivityParamsXMLunacceptableSamplescalcSensitivityParamsXMLacceptableSamplesparamRankingXmlListplotList
2011-06-29 16:40:17.134 CEST
calcSensitivity Web service operation
2011-06-29 16:40:17.134 CEST
696ff73e-1dd4-43bd-b2d7-339bf8d930be
2011-06-29 16:41:14.558 CEST
2011-06-29 16:40:17.134 CEST
pointXmltolistofargumentsvaluespairsofcoordinatesvalueslistargNameList11
text/plain
2011-06-29 16:40:17.217 CEST
Coordinates' names list.
Example value:
z
y
2011-06-29 16:40:17.217 CEST
pointListXml00
pointListXml, i.e. list of <point> elements with list of <coordinate @name="name"> elements.
Note: point list, point and coordinate tag names are ignored, only the structure and "name" attribute are important.
Example value:
<pointList>
<point>
<coordinate name="v">v1</coordinate>
<coordinate name="x">x1</coordinate>
<coordinate name="y">y1</coordinate>
</point>
<point>
<coordinate name="v">v2</coordinate>
<coordinate name="x">x2</coordinate>
<coordinate name="y">y2</coordinate>
<coordinate name="y">ERR</coordinate>
<coordinate name="z">z2</coordinate>
</point>
<point>
<coordinate name="z">z3</coordinate>
<coordinate name="v">v3</coordinate>
<coordinate name="x">x3</coordinate>
<coordinate name="y">y3</coordinate>
</point>
</pointList>
2011-06-29 16:40:17.217 CEST
text/xml
2011-06-29 16:40:17.217 CEST
valNameList11
2011-06-29 16:40:17.217 CEST
text/plain
2011-06-29 16:40:17.217 CEST
argsValsListList
text/plain
2011-06-29 16:40:17.217 CEST
pointListXmlToValuesListListcoordinateNameList1pointListXml0coordinateValueListList22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
coordinateNameList
1
l('text/plain')
java.lang.String
true
pointListXml
0
'text/xml'
2
coordinateValueListList
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketransposelist3transposedList33net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list
3
l(l(l('text/plain')))
3
transposedList
3
l(l(l('text/plain')))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepairOfListslist11list21listsPair22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
2
listsPair
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepointListXmlToValuesListListcoordinateNameListpointListXmlToValuesListListpointListXmltransposelistpairOfListslist1pairOfListslist2argsValsListList
7c543de1-2031-49a2-86c3-bf93bdc3949e
2011-06-29 16:41:14.890 CEST
Extracts pointListXml coordinates values by given coordinates' names of arguments and values. Preserve values order according to names order. Ignores duplicate coordinates, i.e. takes only first coordinate if coordinate name is not unique in pointXml. For missing coordinates a "NA" value is returned.
2011-06-29 16:40:17.239 CEST
pointXml to list of arguments-values pairs of coordinates values list
2011-06-29 16:40:17.239 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.239 CEST
CalculateerrorofSBMLparameterssamplesusingODEssimulationssampleXmlList11
2011-06-29 16:40:17.154 CEST
modelXml00
text/xml
2011-06-29 16:40:17.154 CEST
2011-06-29 16:40:17.154 CEST
text/plain
2011-06-29 16:40:17.154 CEST
simt00
2011-06-29 16:40:17.154 CEST
text/plain
2011-06-29 16:40:17.154 CEST
simtp00
2011-06-29 16:40:17.154 CEST
text/plain
2011-06-29 16:40:17.154 CEST
errVarCsv00
text/plain
2011-06-29 16:40:17.154 CEST
2011-06-29 16:40:17.155 CEST
ignoredVarList
text/plain
2011-06-29 16:40:17.155 CEST
selectedVarList
text/plain
2011-06-29 16:40:17.155 CEST
sampleErrorList
text/plain
2011-06-29 16:40:17.155 CEST
timeArgNamevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
time
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesavalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
false
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokertolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1e-6
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeatolvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1e-12
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistsPairlist21list11listsPair22net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
2
listsPair
2
l(l('text/plain'))
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesetSbmlParamsparamListXml0modelInXml0modelOutXml00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
system
jsbml-0.8-b2-with-dependencies.jar
java.lang.String
true
modelInXml
0
'text/xml'
java.lang.String
true
paramListXml
0
'text/xml'
0
modelOutXml
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
10
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemeanSquaredErrorargValList23argValTemplate2argValList13error00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
argValList1
3
l(l(l('text/plain')))
java.lang.String
true
argValList2
3
l(l(l('text/plain')))
java.lang.String
true
argValTemplate
2
l(l('text/plain'))
0
error
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerefPointListXml2ArgsValsListListpointListXml0argNameList1valNameList1argsValsListList33net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePointListXml2ArgsValsListListargNameList1pointListXml0valNameList1argsValsListList33net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeintersectVarListslist21list11intersection11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringSetIntersection
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
1
intersection
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeEcho_listinputlist1outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.EchoList
workflow
[B
true
inputlist
1
l('')
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecsv2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokediffVarListslist21list11difference11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringSetDifference
workflow
java.lang.String
true
list1
1
l('text/plain')
java.lang.String
true
list2
1
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1
difference
1
l('text/plain')
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1
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1.0
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOdeSolversimtp0model0simt0rtol0sensitivityAnalysis0atol0error00timepointsXml00variablesList11net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
10
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerefOdeSolversimtp0sensitivityAnalysis0simt0model0rtol0atol0timepointsXml00variablesList11error00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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\s*,\s*
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1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistsPairlist2listsPairlist1setSbmlParamsparamListXmlsetSbmlParamsmodelInXmlmeanSquaredErrorargValList2meanSquaredErrorargValTemplatemeanSquaredErrorargValList1refPointListXml2ArgsValsListListpointListXmlrefPointListXml2ArgsValsListListargNameListrefPointListXml2ArgsValsListListvalNameListPointListXml2ArgsValsListListargNameListPointListXml2ArgsValsListListpointListXmlPointListXml2ArgsValsListListvalNameListintersectVarListslist2intersectVarListslist1Echo_listinputlistcsv2Liststringcsv2ListregexdiffVarListslist2diffVarListslist1OdeSolversimtpOdeSolvermodelOdeSolversimtOdeSolverrtolOdeSolversensitivityAnalysisOdeSolveratolrefOdeSolversimtprefOdeSolversensitivityAnalysisrefOdeSolversimtrefOdeSolvermodelrefOdeSolverrtolrefOdeSolveratolignoredVarListselectedVarListsampleErrorList
cd142c7f-f2c7-4cfb-b125-8e058b7ad15f
2011-06-29 16:41:15.363 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.318 CEST
2011-06-29 16:40:17.318 CEST
1e7226b6-6be3-43d7-9f1c-b96e628cdf9f
2011-06-29 16:41:38.405 CEST
Calculate error of SBML parameters' samples using ODEs simulations
2011-06-29 16:40:17.318 CEST
SelectSBMLmodelparametersmodelXml00
2011-06-29 16:40:16.974 CEST
text/xml
2011-06-29 16:40:16.974 CEST
paramNameCsv00
text/plain
2011-06-29 16:40:16.974 CEST
String with a comma-separated list of parameters identifiers. Currently, kinetic parameters and initial species amounts or concentrations are supported. Reaction's local kinetic parameters are identified by using reaction identifier as a prefix, separated with dot (".") from the kinetic parameter identifier.
Example value:
s1, k1, r1.k
2011-06-29 16:40:16.974 CEST
paramXmlList
text/xml
2011-06-29 16:40:16.974 CEST
text/plain
2011-06-29 16:40:16.974 CEST
paramNameListgetSbmlParamsmodel0paramListXml00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
jsbml-0.8-b2-with-dependencies.jar
java.lang.String
true
model
0
'text/xml'
0
paramListXml
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebuildXPathFilterattrName0attrValList1xpath00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
attrName
0
'text/plain'
java.lang.String
true
attrValList
1
l('text/plain')
java.lang.String
true
ifQuoteVal
0
'text/plain'
0
xpath
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetNamexpath0xml-text0nodelist11nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecsv2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterParamsxpath0xml-text0nodelist11nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
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l('text/plain')
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeaddXPathPrefixstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.StringConcat
workflow
java.lang.String
true
string1
0
'text/plain'
java.lang.String
true
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'text/plain'
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.FlattenList
workflow
[B
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inputlist
2
l(l(''))
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outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebuildXPathFilter_attrName_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
name
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetName_xpath_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
/*/@name
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecsv2List_regex_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\s*,\s*
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeaddXPathPrefix_string1_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
/paramList/
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetSbmlParamsmodelbuildXPathFilterattrNamebuildXPathFilterattrValListgetNamexpathgetNamexml-textcsv2Liststringcsv2ListregexfilterParamsxpathfilterParamsxml-textaddXPathPrefixstring1addXPathPrefixstring2Flatten_listinputlistparamXmlListparamNameList
2011-06-29 16:40:17.29 CEST
Mikołaj Rybiński
2011-06-29 16:40:17.29 CEST
db2b5b3c-1782-4df3-b480-9587aa411396
2011-06-29 16:41:15.197 CEST
Select SBML model parameters
2011-06-29 16:40:17.29 CEST
ClassifysamplessampleList11
2011-06-29 16:40:16.897 CEST
text/plain
2011-06-29 16:40:16.894 CEST
sampleErrorList11
text/plain
2011-06-29 16:40:16.897 CEST
2011-06-29 16:40:16.897 CEST
method00
2011-06-29 16:40:16.897 CEST
text/plain
2011-06-29 16:40:16.897 CEST
acceptableSampleList
text/plain
2011-06-29 16:40:16.897 CEST
unacceptableSampleList
text/plain
2011-06-29 16:40:16.897 CEST
errorThresholdcalculateThresholdnumbers1method0threshold00net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
method
0
'text/plain'
java.lang.String
true
numbers
1
l('text/plain')
0
threshold
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeclassifySamplesthreshold0sampleList1sampleErrorList1unacceptableSampleList11acceptableSampleList11net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
threshold
0
'text/plain'
java.lang.String
true
sampleList
1
l('text/plain')
java.lang.String
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sampleErrorList
1
l('text/plain')
1
unacceptableSampleList
1
l('text/plain')
1
acceptableSampleList
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalculateThresholdnumberscalculateThresholdmethodclassifySamplesthresholdclassifySamplessampleListclassifySamplessampleErrorListacceptableSampleListunacceptableSampleListerrorThreshold
8138d7b2-5dfb-4d46-8265-145d6c293d78
2011-06-29 16:41:15.619 CEST
2011-06-29 16:40:16.948 CEST
2011-06-29 16:40:16.948 CEST
Classify samples
2011-06-29 16:40:16.948 CEST
e451693b-800a-4610-b359-6c8e2234db13
2011-07-01 11:23:56.129 CEST