Biome_BGC_CARBON_1_2BBGCDB_Project_ID0 827 2014-04-29 05:57:43.633 UTC A unique numeric ID to identify the Biome-BGC project run in the BBGC database. 2013-06-03 20:26:53.199 UTC BBGCDB_Project_URL0 The URL of the Biome-BGC Project database record created by the workflow. 2013-06-03 20:20:18.167 UTC http://ecos.okologia.mta.hu/bbgcdb/node/827 2014-04-29 05:57:14.289 UTC BBGCDB_Message0 The Biome-BGC single run project (ID: 827) has been submitted and executed successfully. 2014-04-29 05:57:31.392 UTC Output message of the workflow about the run. 2013-06-03 20:23:18.377 UTC Summary_Output0 Annual summary output from Biome-BGC version 4.1.1 ann PRCP = annual total precipitation (cm/yr) ann Tavg = annual average air temperature (deg C) max LAI = annual maximum value of projected leaf area index (m2/m2) ann ET = annual total evapotranspiration (mm/yr) ann OF = annual total outflow (mm/yr) ann NPP = annual total net primary production (gC/m2/yr) ann NPB = annual total net biome production (gC/m2/yr) year ann PRCP ann Tavg max LAI ann ET ann OF ann NPP ann NBP 1997 692.0 9.8 1.2 423.8 279.3 1002.1 102.0 1998 836.8 10.5 1.2 408.6 428.4 983.7 12.9 . . . 2013-06-03 20:31:10.286 UTC The Biome-BGC Annual Summary Output is a standard summary of the results in ASCI TXT format, provided by the simulation. It prints out the annual total precipitation, average air temperature, maximum value of projected leaf area index, total evapotranspiration, total outflow, total net primary production and the annual total net biome production. 2013-06-03 20:14:02.784 UTC Interaction2in10myOutput00 Interaction page for INPUT data, ini, parameters, settings 2014-10-04 06:20:56.924 UTC net.sf.taverna.t2.activitiesinteraction-activity1.5net.sf.taverna.t2.activities.interaction.InteractionActivity in1 0 text/plain java.lang.String false myOutput 0 0 http://ecos.okologia.mta.hu/bbgcdb/node/add/project4 LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesubmit_singlerunnid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://ecos.okologia.mta.hu:5000/singlerun/carbon/{nid} text/plain application/xml String false false false false true nid java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetURLprID0url00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity prID 0 text/plain java.lang.String true url 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemessageprID0out100net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity prID 0 text/plain java.lang.String true out1 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketrimIDid10prID00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity id1 0 text/plain java.lang.String true prID 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_Filefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity fileurl 0 'text/plain' java.lang.String true encoding 0 'text/plain' java.lang.String true filecontents 0 'text/plain' 0 workflow net.sourceforge.taverna.scuflworkers.io.TextFileReader net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetFileurlprID0status0fileurl00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity prID 0 text/plain java.lang.String true status 0 text/plain java.lang.String true fileurl 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecheck_statusnid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://ecos.okologia.mta.hu:5000/bbgc/checkstatus/{nid} text/plain application/xml String false false false false true nid java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>responseBody</name> <depth>0</depth> <mimeTypes class="java.util.Collections$EmptyList" /> <handledReferenceSchemes class="java.util.Collections$EmptyList" reference="../mimeTypes" /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <mimeTypes /> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! responseBody.equals("closed\n"); if ("true".matches(loop)) { Thread.sleep(500); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInteraction1myOutput00 INTRO interaction page for 1) overview, 2) login to BBGCDB 2014-10-04 06:17:36.620 UTC net.sf.taverna.t2.activitiesinteraction-activity1.5net.sf.taverna.t2.activities.interaction.InteractionActivity myOutput 0 0 http://ecos.okologia.mta.hu/bbgcdb/node/1461 LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInteraction2in1Interaction1myOutputsubmit_singlerunnidInteraction2myOutputGetURLprIDtrimIDprIDmessageprIDtrimIDprIDtrimIDid1submit_singlerunresponseBodyRead_Text_FilefileurlGetFileurlfileurlGetFileurlprIDtrimIDprIDGetFileurlstatuscheck_statusresponseBodycheck_statusnidtrimIDprIDBBGCDB_Project_IDtrimIDprIDBBGCDB_Project_URLGetURLurlBBGCDB_Messagemessageout1Summary_OutputRead_Text_Filefilecontents 5c0ff489-7276-4449-9202-86ee1a8326bf 2012-10-27 14:28:40.114 UTC 8c3578a8-f3e9-4945-8156-029ce9f24cd1 2013-06-04 08:23:54.621 UTC 45f92af5-ad22-4a8c-a924-220cd23da358 2013-06-03 11:02:21.27 UTC Biome-BGC CARBON 1.2 2014-10-04 06:23:09.150 UTC 0e259ebf-cda4-4c3c-bb4e-b68d8905074d 2013-06-03 14:20:16.842 UTC 4d3ab520-ff95-467f-84c8-24850be6cf0b 2014-10-02 22:37:42.712 UTC 0de52add-facc-49d3-9958-c8d066492368 2013-06-03 12:29:17.951 UTC feb801a9-03a0-4f71-9139-1342dec573c5 2013-06-03 10:21:09.677 UTC 8460a775-7d9d-4700-a9c7-0b0bd7ef3621 2013-04-25 08:31:17.544 UTC 5d24ad60-f9aa-4043-9ff0-c29b904734f1 2014-10-04 06:21:11.535 UTC b0b7d9d8-bbe6-40f2-b21a-9f26f18bc3bb 2013-06-03 09:22:58.813 UTC f5fb0edb-f5a1-4b25-add3-a124fbc69c61 2012-10-16 09:53:26.412 UTC f2a319c3-897c-4e3f-973a-4691f79f699e 2013-06-03 10:48:38.465 UTC f09ac114-a381-42e2-93bd-cbd1d23a3324 2012-10-14 17:56:02.15 UTC 34dc52c5-7cf4-4ddb-bb2a-2c470ef4fe31 2013-06-03 11:20:49.788 UTC Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. A new version of the model, called Biome-BGC MuSo was developed to perform more realistic simulations in terms of soil hydrology, and improved ecosystem management options essentially (Hidy et al. 2012; Hidy & Barcza 2014). The Biome-BGC CARBON service executes a single simulation run at a given geographic location under that distinctive environmental circumstances, and for a specified time-span of years, past and/or future climate scenarios and management options. The simulations require specific inputs like: - local daily meteorology input dataset - a number of general ecophysiological constants as essential parameters - local site/soil parameters - annual atmospheric CO2 concentration (optional) - annual nitrogen deposition (optional) - output control settings of Biome-BGC variables - spinup and normal initialization settings The Biome-BGC Project Database & Management System (BBGCDB) was developed to support users to manage various Biome-BGC ecosystem modelling investigations, and to share related input, parameter, initialisation and output files. It provides interaction to the Taverna workflows in a user friendly environment of the BioVeL Portal. The interaction page provides a user friendly interface to select model version and all the other predefined parameter settings and inputs. Two model versions were implemented: Biome-BGC 4.1.1 MPI (Trusilova et al. 2009) and Biome-BGC MuSo 3.0 (Hidy & Barcza 2014). 2014-10-04 06:24:48.536 UTC 3eeae66a-5fbd-41ba-a709-978fd114b9e5 2014-04-29 05:58:35.626 UTC 92fdd4a8-f621-41b2-8ab1-f6539e3015bf 2014-10-03 14:03:35.59 UTC fcf0f446-74b9-4fb7-8c55-fdf424d9cad5 2013-06-04 09:22:19.140 UTC 732105b7-a62a-494c-821d-738af2fd2fb4 2013-06-03 10:09:41.907 UTC 0c22ad8b-50cf-4bc8-b5bc-f9bedcb2ea06 2013-06-04 08:36:43.193 UTC e0eb0652-11e1-4b4b-b93c-44ea256de02f 2013-06-03 18:15:19.8 UTC 4893ce34-3122-479c-a139-861ebd665f3e 2012-10-14 17:55:24.12 UTC f4b88783-05cb-48bd-a98f-a6279a9d7ed1 2014-04-29 05:50:59.921 UTC 380c6ee4-f507-4169-a8bd-98f4240a1758 2013-06-03 10:55:20.6 UTC 8dc300df-1cdd-492f-a108-f9702f71887a 2013-06-03 13:37:53.371 UTC 7de22aa5-45e4-42ad-87c2-c9b0b8548d79 2012-12-06 08:14:27.267 UTC 525a972e-8a92-4d47-a898-c7ba3f857e1f 2013-06-03 14:27:26.190 UTC d4fe47f7-75a7-4ab5-96a5-9151a6ced365 2013-06-03 13:29:17.391 UTC 91d3fef1-81fe-4d68-8e8f-b3c8a4b2bc65 2013-06-04 09:29:55.374 UTC 7ea74340-1355-42c2-8e3b-71f088beb337 2012-10-27 14:23:50.973 UTC 4325866d-81fe-4939-ac6d-8148dfbc2968 2013-06-03 11:16:22.378 UTC ac96a359-f071-403f-a317-d4d1ec12b85c 2013-06-04 09:15:30.809 UTC 4065e3c9-f60d-4de6-afe2-442f262a9906 2012-10-16 08:01:27.488 UTC f3f4d036-0add-4189-9707-f7cea5a6b504 2013-06-03 13:21:56.201 UTC a9d96780-3a8b-4e8d-b28f-f0f501e96647 2012-10-14 17:50:25.402 UTC 268405fd-f592-4422-ad48-258d1f475f6c 2012-10-12 09:15:04.501 UTC d2252363-861f-4513-954f-a67155941320 2014-04-29 05:52:12.59 UTC 9aa163d1-bf62-46e1-ad06-5dd11bbce070 2013-06-04 08:43:27.294 UTC 42ac26da-5a73-40fb-82ec-dd216d077a04 2012-10-16 11:26:17.592 UTC 0a5368cd-2e5d-4ca4-98e5-2ceea5347ac0 2012-10-12 08:29:43.637 UTC fece4c42-bbd1-4dd2-9062-d4877ef2c228 2013-06-03 20:27:42.106 UTC c3ad24e1-0952-4e38-9d4d-e3a049c3a90b 2013-06-03 14:01:24.250 UTC 99ee6e48-efe9-460a-8e28-f3ade1cb365e 2012-10-27 14:22:18.566 UTC aaae2ca8-f82c-4cea-bbfd-e9b1f4653f00 2013-12-16 13:24:56.409 UTC 91452174-52a3-4dad-956d-1ce58b21c43e 2013-06-03 14:15:56.604 UTC 01aa5f12-a2bc-49df-948f-0c946864eba9 2013-06-03 20:04:19.955 UTC 735efbee-ab15-4f69-973c-906a2604f7ec 2012-10-12 08:16:38.782 UTC 0ec93abe-d329-4a42-a152-d2e9996b14b5 2013-03-11 12:25:36.97 UTC b40b57b4-8d6a-425d-8146-77b2068610f0 2013-06-03 13:28:35.735 UTC 826f2126-4300-4724-b0ef-f0367080d398 2012-10-12 08:11:52.235 UTC a6fc4ab7-a55b-4f5f-b25e-6ddd53ed0854 2013-06-03 11:19:47.436 UTC 201d8854-61b6-4b02-94a1-39fd6d8eb1cd 2013-06-03 14:05:07.294 UTC aa362175-7d33-454c-a8e5-396abe89c786 2012-10-11 12:40:02.83 UTC e7479e88-9be4-43b4-ae11-c11cbd7f16fd 2012-10-12 12:51:12.119 UTC bcaa9764-4a08-4796-acb9-b438e7e8ff2d 2013-06-03 10:11:15.930 UTC e6c952d6-b9ff-4c11-8e12-dd988ae1e9ed 2013-06-03 20:26:53.450 UTC 6aa5e2d6-3671-44b3-b55c-41f991074ae5 2012-10-16 08:28:32.939 UTC 032c67d0-c806-416d-ab75-95634078df17 2013-04-25 08:32:25.669 UTC 92a00cab-41c2-45c2-84a5-312e3906a4af 2014-10-04 06:24:51.677 UTC 9aa5a314-648c-40ce-9497-3ebeb73e4b76 2012-10-11 11:26:06.534 UTC Dora KRASSER, Peter ITTZES, Ferenc HORVATH 2013-06-03 19:55:25.533 UTC 0009a25d-b763-43b1-8448-6b6c41abf82d 2012-12-06 08:21:21.301 UTC 662cef32-28dc-48bb-836c-6f7be3e18d34 2013-06-03 13:50:42.494 UTC 6be2e58a-f4f5-4d72-8703-f4987c4449df 2014-04-29 05:51:41.851 UTC f7077d39-b013-47ba-b20f-65a7f6efb503 2013-06-03 12:42:27.674 UTC 032c67d0-c806-416d-ab75-95634078df17 2013-03-21 14:30:38.998 UTC 59b246a3-04da-40ee-90ff-6a72265ba22c 2013-06-04 08:41:42.914 UTC eed99805-32bd-44e2-9986-7518df23f99e 2013-06-03 20:33:08.315 UTC