Map_genes_to_chromosinput_file00 the input gene file with entrez gene ids, that will be mapped to the genome 2013-08-20 16:27:39.105 UTC gene_ids_column00 1 2013-05-22 08:20:42.155 UTC This input parameter indicates the column of the input file where the entrez gene ids are stored 2013-08-20 16:29:54.376 UTC mapped_file_biomart the file that has been created with the gene information on the chromosome 2013-06-07 12:52:28.676 UTC map_to_chr_locationgene_ids_column0input_file0file_biomart00 This workflow initially reads the input file that is used by the biomart funtion to obtain the chromosomal location of the genes included in this file. The gene_ids_column indicates which column describes the entrez gene ids. 2013-10-04 15:05:15.460 UTC net.sf.taverna.t2.activitiesrshell-activity1.4net.sf.taverna.t2.activities.rshell.RshellActivity gene_ids_column 0 false input_file 0 false file_biomart 0 0 false localhost 6311 true false gene_ids_column DOUBLE input_file TEXT_FILE file_biomart TEXT_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemap_to_chr_locationgene_ids_columngene_ids_columnmap_to_chr_locationinput_fileinput_filemapped_file_biomartmap_to_chr_locationfile_biomart 876a8ae7-ca3d-4dc1-9e8a-6044a77210e7 2011-12-27 14:23:15.3 UTC 2eaf6853-f571-4c85-98ef-fc9db9307da4 2012-01-12 10:27:06.965 UTC 7013dd2c-11ce-4d12-938b-5d1a8015a26f 2012-01-12 10:28:05.286 UTC fffc8fe5-cd49-4d29-b815-2e9c977a8751 2013-06-07 12:53:39.930 UTC c2bcf7e0-ae2d-4a91-ad20-9a69e12ad77a 2012-05-02 15:38:46.450 UTC 7ea80af1-dc22-439c-ab84-f024436c8dde 2012-02-28 17:45:44.454 UTC bba81a85-a5e4-4748-826f-97717df22d1f 2013-09-30 16:06:10.45 UTC 4a89f307-9262-402b-86aa-29d5a1dac342 2013-04-05 13:32:53.773 UTC 9bff475f-7282-4a55-aeb8-11f4169c29b0 2013-10-04 15:05:16.693 UTC 354ce877-11b3-48c7-8ede-835cd674aec8 2013-04-03 13:32:56.158 UTC a8c83682-1542-49f3-8465-6383d8423a91 2012-03-16 11:24:42.935 UTC 78773138-f41c-4f2f-bdf1-17cd3c60f95d 2012-01-12 12:45:00.522 UTC 4fe7eaf8-8f32-4669-b559-e0e081723baf 2012-03-14 17:36:31.533 UTC 93643bed-2824-49c9-9cca-303d12c5c892 2012-02-28 17:34:09.562 UTC 3690570c-5689-4ee9-9e7e-1f0cc907b89e 2013-06-07 13:17:24.25 UTC 35a893e0-49dc-403e-a6c6-0a4ea9f4afdd 2013-01-21 19:18:16.311 UTC e89f0d5f-4a9c-4a33-a6fb-d745b906c22c 2013-05-14 13:43:20.329 UTC 9ed22857-d048-42a9-b826-ea99d826d2b7 2012-01-25 10:53:18.255 UTC 8a2634a8-7704-4581-bbd6-7bdd7ba8e979 2013-06-07 12:09:36.964 UTC 1f93683c-9025-4c07-beb8-5d1330376636 2012-01-13 17:30:05.15 UTC 8668bd67-c9e2-41aa-ac88-6a8d1de8d45f 2012-01-23 15:49:05.604 UTC b867d12e-92f4-494c-8083-5a39bf9df394 2013-04-05 13:32:05.873 UTC 05fd2152-1d29-47ae-bbba-6dd355b6f953 2012-05-01 16:09:51.781 UTC 72eeba8c-1845-48ea-b1af-1e25dac139e0 2013-05-14 13:42:55.813 UTC 09ab8271-1c8c-4607-8e4f-b72e730b753f 2013-01-21 19:45:28.877 UTC cd37127f-52a1-4c11-a65a-d2033e5ceb93 2012-01-12 12:43:58.370 UTC 1e040479-ee2e-4850-a90c-c850bc73a029 2012-02-02 17:26:58.989 UTC 8324e739-275b-4ede-a85b-06a62f1d7e48 2013-04-05 13:22:01.547 UTC 6f52ed6c-243f-47ed-84eb-bb53eab766c1 2012-01-23 16:04:08.804 UTC 0190dd2e-e537-4154-9ade-d15ea4c42828 2012-11-29 12:45:42.22 UTC b82bfd19-6ed0-45d8-8dfb-eea333d1d206 2012-03-16 11:27:26.359 UTC 34d361e5-93f0-497e-aeca-2ff5917b0baa 2012-05-02 14:22:06.726 UTC 2d6d68b7-ed9d-47bf-92d5-1e329cdd7494 2012-11-28 14:51:01.456 UTC 26652f56-1744-4bed-b021-a7b5dbd0fe06 2012-02-28 17:29:55.544 UTC 56aa88f2-07c0-41c1-acb6-9a09bd5e2188 2012-07-04 12:04:09.862 UTC 4a62ec6d-8b9d-4750-9293-3d3315725a18 2013-04-05 13:15:10.241 UTC 5feeeb67-d026-43b4-8d22-be85cbb63cd2 2012-01-13 17:35:07.791 UTC 18121e2b-08dc-46be-beb6-58d0e61b36dd 2012-03-19 14:30:20.92 UTC 72757907-4781-49f9-8494-e56fe03221f6 2012-01-23 15:43:24.140 UTC 5992b5e3-797d-4c46-8435-3c3400a381ac 2013-04-03 14:15:01.558 UTC f3e4be80-53da-40de-a1e5-e4e8683f3968 2012-01-12 10:22:36.113 UTC 0498d6b4-4faf-49a2-8789-607fd3d1bcf5 2012-02-28 17:37:48.370 UTC 24e51f74-4272-45c3-ba6e-047a1e70ae5b 2012-02-21 16:09:43.677 UTC 285d688c-516d-4aee-82de-985784a8c7ec 2012-01-23 15:51:57.700 UTC 310211ed-bdd6-48a7-bd43-36efe737ca3f 2012-03-06 12:24:55.466 UTC dda72925-33e4-4913-b89a-0efdc17f9742 2013-04-05 13:20:40.67 UTC 4d5bb65a-bdcb-4361-aa58-77a777a5bc7a 2013-10-16 13:50:46.101 UTC 52d35693-e423-4fc9-b1f3-8772b42da775 2012-07-06 13:51:28.21 UTC af45dc87-c76a-4eb4-aa0e-3725f73a9206 2012-05-02 15:43:51.666 UTC f42e90a9-3d09-4676-b591-7429f9f4be2c 2012-01-13 17:14:34.531 UTC 65f8d6d5-75df-4501-b569-62b830bfdc90 2013-05-14 15:21:31.73 UTC 32bd7247-9092-47ba-bf91-32918940de12 2012-01-13 17:16:40.223 UTC 84b567d6-5959-40b7-ad2f-276b06477759 2012-03-02 14:36:35.654 UTC 9500e997-a5eb-487d-ac6b-d54b4260738f 2013-05-21 13:51:12.908 UTC 8bdba43c-f4dd-4b68-a875-5919e5368b0e 2012-11-29 13:39:15.240 UTC e0ada8b9-b09d-43ab-9de3-aa794ef5ad47 2013-04-05 13:23:47.201 UTC 6715f4c6-82c8-4834-9f0d-a0d361c14f9c 2012-03-16 11:03:58.944 UTC 1994bb46-2216-4e09-9cf2-975ff319303a 2012-02-03 17:53:34.921 UTC f9a76544-419b-414b-b399-d9025197a7f4 2012-01-13 17:34:46.223 UTC a522a2d9-5fd4-44c2-ab29-f2dc81e4ab0f 2013-04-05 13:11:34.35 UTC 2725239d-771a-42f7-8df5-484177f2e99f 2012-02-28 17:41:27.290 UTC 5fb67552-af7f-4b37-b225-0c351ed7358d 2012-03-16 11:24:57.862 UTC a5b2fbf3-9d37-411f-9477-2a958001dbc5 2012-05-01 15:57:52.198 UTC 68556eb1-6ea9-4dae-840d-76a90510904b 2013-01-21 19:18:33.990 UTC 8e824417-0177-4ccd-a2c6-e489af07eb25 2013-06-07 12:59:21.907 UTC ce7a200c-c879-4bbb-a4b6-ee9eabfef3ea 2013-05-14 14:27:14.326 UTC e6671313-8ed6-45a0-8181-146541c6508c 2012-03-12 10:57:24.570 UTC 1ded51ef-e4d0-4288-9528-8fff8f8ed323 2013-06-07 12:11:57.334 UTC 6c30c24d-592b-49ad-8a40-38c743a64080 2013-04-05 13:33:15.837 UTC e772b475-5624-4db6-a73b-fbf65d049efa 2012-05-02 10:22:47.997 UTC 03ee795c-46a4-430b-9b90-110004cae31a 2012-01-12 11:05:43.65 UTC 28de2888-db5c-4c1b-9969-eddc0568e903 2012-01-23 15:54:35.283 UTC a07e5ca0-f7c4-4707-95d0-fa3158e5da4d 2012-04-11 13:26:36.631 UTC 052fda0d-5872-49c0-a59b-d0239b774e59 2012-05-01 16:18:12.413 UTC 3eaf650f-a28f-4bf0-8b5a-b0af94751bb1 2012-02-02 17:06:50.787 UTC a517c94b-1281-4369-aa8e-0f12ea270f5b 2013-06-07 13:12:25.162 UTC 8a66b26e-9cbb-4f7c-aa20-5cc23efd411d 2012-02-21 16:08:49.41 UTC e1fcd2bd-da4f-4166-b8cf-540887aa9909 2012-01-23 15:10:09.87 UTC 04f04a5c-2186-4413-b5c2-411e12f316d8 2012-03-12 12:28:07.509 UTC 85a19bb3-d696-4f07-9b5a-7ec2d64772bf 2013-04-05 13:33:52.470 UTC 6747e4c4-35d8-4433-8e69-056ec3a6acd0 2012-10-24 15:21:39.966 UTC 79bf1930-e817-418f-8caf-1f7a639bfca3 2012-10-24 15:22:47.925 UTC f393e592-ed9c-4ebc-8ef2-6b9c00ecc82e 2012-04-17 17:39:20.100 UTC f093c6cf-3b0f-47f9-9467-2be0227a3eb2 2012-01-13 17:12:57.440 UTC 4ad0b775-e2f9-447f-9870-cfd453849703 2013-08-20 16:39:36.815 UTC 4e87eea9-50a7-4b49-ba1e-a55bf6a309cc 2013-06-07 13:17:09.167 UTC 7cd1302b-7f76-45a7-b29f-2f885eda5899 2012-01-12 10:23:33.765 UTC 1d2d4aa6-733c-428b-a7c6-b94c3b489016 2012-01-13 17:39:41.119 UTC d3e371d9-5f71-4e80-bae2-ddefbedc0dd5 2011-12-27 14:20:50.737 UTC a7a0c686-a0cf-4b1b-b70d-6414a703857d 2012-11-29 13:10:11.687 UTC Map genes to chromosomal location for T2WEB 2013-11-04 19:36:43.81 UTC a378a4b4-bcf5-4dd2-894c-38845e20bd20 2012-02-28 17:36:50.442 UTC 7d38ee9d-1d61-42ca-b05e-9bc953658479 2013-05-14 13:41:58.796 UTC 8e19dbb6-62b6-44ec-a67d-e06adbe862d6 2012-01-23 16:00:45.164 UTC 599d02fe-3b5d-4402-94bc-855d203fafad 2013-10-01 09:28:03.437 UTC 5b6c1ad7-5f2f-4792-a93e-d790802aac4d 2012-04-11 13:30:36.107 UTC 7aeeed9c-19d4-45b6-8f14-fb3ad5ef042d 2012-01-13 17:10:27.443 UTC e6c10f70-d683-4b84-a1ea-eaf97367884f 2012-02-28 17:31:51.46 UTC 82baa130-5a90-4381-9f13-514e3e725033 2012-04-11 13:17:29.347 UTC d3026690-fa49-43a5-8ad1-1a85ce5af7e0 2012-03-23 12:30:57.953 UTC 7f9163b2-18d9-4d87-8db4-cd4c7caaf11c 2012-03-12 11:04:56.756 UTC e1f0d324-e1d3-40c8-b9c8-da09895a70ab 2012-03-16 11:04:12.300 UTC dff0c14e-60a8-48ea-927a-5bec495e6275 2013-08-28 12:26:29.127 UTC 03e29a73-a9a2-46e8-8b65-32a46267f843 2012-03-12 10:52:18.920 UTC bd7f70e6-7bb1-459a-8831-e0edef33d6c7 2012-02-02 17:27:10.151 UTC 470898de-e015-47b1-80ff-b7c97274496a 2011-11-09 09:00:12.798 UTC cb0c7dfd-46e7-46f9-b89d-d38f3444472b 2012-01-12 10:26:20.241 UTC 9c6a36f2-b160-4379-a39f-7b002ab8e2fb 2012-11-28 14:45:22.204 UTC b0c358e7-5e35-47ae-b1b0-20a7210da43f 2012-03-12 12:21:08.138 UTC 9c348697-4767-448e-a2cd-0ce52a3e1c51 2012-03-12 10:54:38.900 UTC e1f0d778-a909-4757-b2da-22aaeafe7778 2012-01-13 17:03:41.63 UTC 3b5b38f4-b166-44d1-bb75-146fe47759cd 2012-04-11 12:55:03.839 UTC 0c32e81a-fc7c-40d0-917a-dd99a7856fad 2012-01-24 16:31:12.487 UTC a6e68de6-3e39-4767-ba5f-eb35748a7f89 2012-11-29 12:46:38.560 UTC 94dbb682-c911-426d-9580-33c485a06496 2013-08-29 09:22:54.660 UTC 0b1ad25d-4c58-426f-a4fb-cc4269a106ee 2013-05-14 15:25:22.313 UTC ccfd5f63-2b2c-48eb-97b4-3617780952ab 2012-01-23 15:48:47.860 UTC 21dc5934-9275-426b-bb4c-b8f141c466ff 2012-01-13 17:30:20.999 UTC 0ea24254-4edf-4bb8-b167-1ef0c0e2ac01 2013-02-10 18:05:40.152 UTC d2697d83-3779-4abc-9a00-22eeb40c5a3f 2012-03-19 14:32:41.209 UTC e7fc099f-0c52-4adf-ac7f-633db53cc3b1 2012-07-04 11:40:03.532 UTC 7272b3ef-3302-42d1-bf4d-e80ef1615d20 2013-04-05 13:19:19.834 UTC 9b2238fb-e2cb-422e-a598-9c5eb3b9abd7 2012-01-25 10:56:18.175 UTC 8d3cf263-bdab-4f63-ac58-defeaa738541 2012-11-29 08:59:10.232 UTC 2f08282b-4c52-4e2e-8fd7-80eb730d8b33 2012-04-11 12:50:49.248 UTC 114b9e15-0d43-4bc3-aa58-b59bbf7c2338 2012-01-23 15:09:33.582 UTC d9bfe3ea-e265-406f-9f5b-dd3f37f9c848 2013-05-14 14:30:05.858 UTC c859603e-942f-4739-862b-72bd0296b403 2012-11-29 13:39:28.479 UTC 618f5c42-543e-481f-bf19-331a56a1e1e1 2011-11-23 18:05:27.37 UTC fb6206a1-2acc-40d2-bb96-f5b7cd3231da 2013-06-07 12:50:19.998 UTC 6394f1b6-4fc8-464b-954f-5ee53e73f218 2013-08-28 09:40:58.147 UTC 693a30fa-e30c-4b72-ab17-3272cac8e39e 2013-04-05 13:14:22.428 UTC 9477e43b-9f6e-4352-b550-dd8bb239d49c 2013-10-04 15:18:25.609 UTC 4d51dfc0-d65c-480b-b09e-fa320b37f697 2013-05-22 08:20:42.267 UTC 1e11f2fe-895e-4dcb-bd30-c0814bc18e3a 2012-02-28 16:44:52.451 UTC 596f0faa-8310-4bb5-b80f-3ccb0bf98f4c 2012-02-28 17:43:06.110 UTC 3e8ef725-6f2e-4738-a968-59b22a07c106 2013-05-22 08:26:29.226 UTC caa2ebfb-8f85-4d0d-a2c8-f3940a0dd306 2012-10-24 15:23:20.651 UTC 8784bebb-804a-4c47-b099-7325c5eea15d 2012-01-23 15:54:25.836 UTC Eleni Mina 2013-02-10 18:02:55.681 UTC c440160a-2a60-4ce3-8a56-2c12a1e91356 2012-03-28 14:07:33.935 UTC f249a3d3-3d09-4e32-a4eb-1df6e068039a 2013-10-04 15:20:53.738 UTC 3713d562-1bac-4e67-a3ed-c723f077a598 2012-05-02 16:02:30.225 UTC d9899d26-66bd-4e96-ad1c-ad0e34a3730d 2013-04-05 13:11:11.538 UTC 6b857a8c-3615-4a4b-ba5a-c1d27a160762 2012-01-23 16:04:21.708 UTC 3e44494b-6ab1-49fe-a94a-72702861a35a 2013-04-05 13:23:01.328 UTC 0fe98f30-3b53-4435-bad0-c139bfd74e67 2012-08-29 07:27:34.900 UTC 665208e8-0517-4c55-a24d-9319c8eeea01 2013-04-03 13:31:23.272 UTC 1fa990e0-d281-42bb-989b-dcf727e1e2f3 2012-03-12 12:22:05.469 UTC 5b94dfc2-efa3-462e-bea0-770478729a68 2012-05-02 14:27:09.506 UTC This workflow maps a gene list on the genome using the biomart service. IMPORTANT NOTE: Keep in mind that for uploading files on t2web, you need to wait few minutes before executing the workflow. That's essential because the file needs first to be uploaded on the server. 2013-10-04 15:18:27.9 UTC 9b2311f3-c49c-4482-ac30-7d5ce4a8e715 2012-01-23 15:52:06.108 UTC 8af09891-5daf-412e-a1a9-9a725f3b8b6a 2013-05-14 14:29:52.636 UTC 553ba027-55bf-4d24-9a97-7e0fc5a2ea65 2012-02-28 16:45:24.302 UTC 6a4e5fd7-9c16-4f7f-846a-3421c540b95b 2013-08-20 16:40:32.816 UTC aa2ba61d-0e3b-435c-8af3-b92bfce471e4 2012-05-01 15:38:05.753 UTC 153fe590-4528-4360-a704-ae165d2572ad 2012-03-02 14:33:10.290 UTC aa33267b-8d12-4620-ba3a-4e2de5d4db95 2013-11-04 19:37:42.926 UTC 2690cc01-cad9-429d-8ea5-1a21608a4814 2012-08-29 06:42:50.807 UTC 7c963f5e-74fe-4db4-9eb6-2128a2a6b919 2013-04-05 13:19:17.179 UTC da1d62d6-32c7-4136-a209-2ba618cb0633 2013-05-14 14:45:51.117 UTC 5aa89c9a-b177-4cc4-a519-c30a6676156f 2013-04-05 13:14:59.775 UTC 92297c5d-11da-4c73-baa6-62c404913346 2012-10-31 15:56:48.918 UTC 774d6daf-5713-40bb-8b71-7d02630645ce 2013-10-04 15:17:52.876 UTC 2357c4e9-76a6-489d-be03-fa6a7dad896f 2012-01-13 17:53:14.15 UTC b9eae06c-00db-4aa9-b82a-05b36cd2089b 2012-02-21 16:26:31.346 UTC 4de428b5-4d50-4238-b2af-1a7a4c3a5503 2012-03-12 12:26:06.557 UTC 4ac77458-57f2-4e4f-bbe7-f7ecb7465e29 2012-04-11 12:49:51.866 UTC 14ab2c2e-c881-48af-834a-b3a2bda96263 2013-04-05 13:16:32.973 UTC 0078e146-44e3-48a2-888e-4f50453e83b3 2012-01-24 16:31:34.383 UTC c1626ca5-8213-487d-a624-a0bd382fdacb 2013-04-05 13:31:32.712 UTC