Get_ENSEMBL_cross_reUniProtID_list11 A list of UniProt identifiers 2015-11-16 13:32:31.930 UTC P29083 2015-11-16 13:32:20.259 UTC ENSP_ID_list1getUPIForAccessionparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/picr/service?wsdl getUPIForAccession net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccession_inputaccession0taxonId0searchDatabases1onlyActive0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity accession 0 'text/plain' false ac_version 0 'text/plain' false searchDatabases 1 l('text/plain') false taxonId 0 'text/plain' false onlyActive 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getUPIForAccession" name="parameters" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}getUPIForAccession"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccession&gt;accession" /><s:basetype optional="false" unbounded="false" typename="string" name="ac_version" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccession&gt;ac_version" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="string" name="searchDatabases" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccession&gt;searchDatabases"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccession&gt;taxonId" /><s:basetype optional="false" unbounded="false" typename="boolean" name="onlyActive" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccession&gt;onlyActive" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccession_outputinput0getUPIForAccessionReturn11net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false getUPIForAccessionReturn 1 l('text/xml') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getUPIForAccessionResponse" name="parameters" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}getUPIForAccessionResponse"><s:elements><s:arraytype optional="false" unbounded="true" wrapped="false" typename="UPEntry" name="getUPIForAccessionReturn" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}&gt;getUPIForAccessionResponse&gt;getUPIForAccessionReturn"><s:elementtype><s:complextype optional="false" unbounded="false" typename="UPEntry" name="" qname="{http://model.picr.ebi.ac.uk}UPEntry"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CRC64" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;CRC64" /><s:basetype optional="false" unbounded="false" typename="string" name="UPI" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;UPI" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="identicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;identicalCrossReferences"><s:elementtype><s:complextype optional="false" unbounded="false" typename="CrossReference" name="" qname="{http://model.picr.ebi.ac.uk}CrossReference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;accession" /><s:basetype optional="false" unbounded="false" typename="string" name="accessionVersion" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;accessionVersion" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseDescription" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;databaseDescription" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseName" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;databaseName" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateAdded" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;dateAdded" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateDeleted" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;dateDeleted" /><s:basetype optional="false" unbounded="false" typename="boolean" name="deleted" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;deleted" /><s:basetype optional="false" unbounded="false" typename="string" name="gi" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;gi" /><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://model.picr.ebi.ac.uk}CrossReference&gt;taxonId" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="logicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;logicalCrossReferences"><s:elementtype><s:complextype id="{http://model.picr.ebi.ac.uk}CrossReference" optional="false" unbounded="false" typename="CrossReference" name="" /></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="sequence" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;sequence" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="timestamp" qname="{http://model.picr.ebi.ac.uk}UPEntry&gt;timestamp" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvoketaxonIDvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 9606 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeonlyActivevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity TRUE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesearchDBvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity ENSEMBL_HUMAN net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_accessionxml_text0firstNode00net.sf.taverna.t2.activitiesxpath-activity1.5net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <ns2:getUPIForAccessionReturn xmlns:ns2="http://www.ebi.ac.uk/picr/AccessionMappingService" containsActiveSPTRCrossReference="true"><CRC64 xmlns="http://model.picr.ebi.ac.uk">7B0DEE7A198DA9A6</CRC64><UPI xmlns="http://model.picr.ebi.ac.uk">UPI000013D80E</UPI><identicalCrossReferences xmlns="http://model.picr.ebi.ac.uk"><accession>ENSP00000461625</accession><accessionVersion xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:nil="true"></accessionVersion><databaseDescription>Ensembl Homo sapiens</databaseDescription><databaseName>ENSEMBL_HUMAN</databaseName><dateAdded>2012-04-30T00:00:00.000+01:00</dateAdded><dateDeleted>2015-09-19T00:00:00.000+01:00</dateDeleted><deleted>false</deleted><gi xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:nil="true"></gi><taxonId>9606</taxonId></identicalCrossReferences><sequence xmlns="http://model.picr.ebi.ac.uk">MAAAVLSGPSAGSAAGVPGGTGGLSAVSSGPRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLMCLLRLHGSVGGAQNLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQTQDPPATMELAVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRACGSLKGKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYEGAETAPVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLSVSSKNISLHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQQGEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPPQELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEKPPPPTEPDS</sequence><timestamp xmlns="http://model.picr.ebi.ac.uk">2009-01-12T00:00:00.000Z</timestamp></ns2:getUPIForAccessionReturn> /ns2:getUPIForAccessionReturn/default:identicalCrossReferences/default:accession ns2 http://www.ebi.ac.uk/picr/AccessionMappingService default http://model.picr.ebi.ac.uk net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccessionparametersgetUPIForAccession_inputoutputgetUPIForAccession_inputaccessionUniProtID_listgetUPIForAccession_inputtaxonIdtaxonIDvaluegetUPIForAccession_inputsearchDatabasessearchDBvaluegetUPIForAccession_inputonlyActiveonlyActivevaluegetUPIForAccession_outputinputgetUPIForAccessionparametersextract_accessionxml_textgetUPIForAccession_outputgetUPIForAccessionReturnFlatten_Listinputlistextract_accessionfirstNodeENSP_ID_listFlatten_Listoutputlist Magnus Palmblad 2015-11-16 13:32:36.561 UTC f89475f0-4019-4263-b47d-f18102ccba90 2015-11-16 13:27:40.911 UTC 14dd4514-9c8b-4050-8a86-7a6b2d306559 2015-11-16 13:09:51.761 UTC 522f18e5-50da-48fe-ad01-ae56b5e3bffb 2015-11-16 13:35:20.841 UTC 073153fb-fc90-42f6-bf6e-925212ced5ae 2015-11-16 13:28:55.210 UTC f6ced291-f3db-4734-abd2-55cd5df2c96f 2015-11-16 13:26:50.210 UTC 6e707c6d-53da-4b74-80c8-0f6cd81286f9 2015-11-16 13:29:02.745 UTC d2459daf-da62-47b2-b898-eeefde1488a0 2015-11-16 13:23:38.214 UTC 3bd409cc-e62a-4cda-857c-d7563501e2d7 2015-11-16 13:01:30.566 UTC a8158ab8-4af4-4ab8-91ea-339351f02135 2015-11-16 13:13:20.949 UTC d8547b44-56bf-4ddc-9cf3-bb49505e069a 2015-11-16 12:57:24.581 UTC 2cfb19f0-87ef-4b1b-aaa4-b96ca9700b44 2015-11-16 13:26:04.437 UTC 8cdf0b86-54d2-4b61-8aef-9d17515e9ae2 2015-11-16 13:04:39.12 UTC cf11d110-949a-402f-b415-2440074a3928 2015-11-16 13:37:48.754 UTC ad324c58-ffed-45b4-8595-0e8e38d63eb8 2015-11-16 13:29:58.750 UTC 9a3bfe26-fc50-4455-8a8d-510f1c60deaa 2015-11-16 13:07:54.505 UTC cfc77790-b490-406e-95ad-a48ef2bdebfe 2015-11-16 13:35:39.399 UTC 167fd857-138d-440f-84a0-6dd3b555d368 2015-11-16 13:23:05.828 UTC 7ac1f263-0f42-4a70-b096-8d6ab5d39f6e 2015-11-16 13:03:04.961 UTC Get ENSEMBL cross-references for UniProt IDs 2015-11-16 13:33:09.855 UTC This small workflow uses the PICR (http://www.ebi.ac.uk/Tools/picr/) WDSL Web Service to look up ENSEMBL (ENSP) cross-references for UniProt IDs. The input is a list of UniProt IDs and the output a corresponding list of ENSEMBL IDs. This instance of the workflow specifically uses the ENSEMBL_HUMAN database and taxonID 9606 (Homo sapiens). 2015-11-16 13:37:45.898 UTC 88d340a0-eadf-473c-8bff-7517fd09e6ba 2015-11-16 12:58:37.96 UTC 60d5c19b-3c44-4eb2-a90f-3fd09eab7eb0 2015-11-16 13:22:58.393 UTC 4cfa9e03-410b-4fcc-9302-84615ae4ed41 2015-11-16 13:31:50.263 UTC 2bf39094-f6dd-4e74-bf61-a926705c74a1 2015-11-16 12:51:05.253 UTC da2679c9-756b-46d4-a8aa-a05c3d9465eb 2015-11-16 13:08:55.964 UTC c39fd418-748d-40da-9f3b-eae48ab09641 2015-11-16 12:54:26.935 UTC 2cbae6f7-11de-4711-8c27-8a90696ae226 2015-11-16 13:30:45.793 UTC 52f4fb5a-4e20-44c7-bdbf-c8b409a9be4f 2015-11-16 13:24:52.809 UTC