This workflow load molecules from the database and than checks whether the perception of the atom types works or not. After the extraction of the database identifier from all molecules which caused problems during this process will the identifier be written to a file.
org.openscience.cdk.applications.taverna.database.pgchem.IterativeMoleculeFromDBReader
jdbc:postgresql://172.17.6.65/cdk-taverna
SELECT * FROM molecules ORDER BY id LIMIT ? OFFSET ?
org.openscience.cdk.applications.taverna.database.pgchem.IterativeHasNextMoleculeFromDB
org.openscience.cdk.applications.taverna.atomtype.PerceiveAtomType
org.openscience.cdk.applications.taverna.database.pgchem.IterativeGetMoleculeFromDB
org.openscience.cdk.applications.taverna.io.iterative.IterativeFileWriter
org.embl.ebi.escience.scuflworkers.java.FailIfTrue
org.openscience.cdk.applications.taverna.tools.ExtractDatabaseIDFromMolecule
org.openscience.cdk.applications.taverna.io.iterative.IterativeFileWriter
Completed
Iterative_File_Writer
Has_Next_Molecule_from_database
Scheduled
Running