blastpusingtheMRSsystemsequence00 text/plain 2009-11-03 17:38:44.644 CET 2009-11-03 17:38:44.644 CET db00 text/plain 2009-11-03 17:38:44.644 CET 2009-11-03 17:38:44.644 CET hitsBlastJobResultparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.WSDLActivity http://mrs.cmbi.ru.nl/mrsws/blast/wsdl BlastJobResult net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastJobResultOutinput0effectiveSearchSpace00lambda00dbCount00entropy00dbLength00kappa00hits11net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="BlastJobResultResponse" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}BlastJobResultResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="dbCount" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;dbCount" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="dbLength" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;dbLength" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="effectiveSearchSpace" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;effectiveSearchSpace" /><s:basetype optional="false" unbounded="false" typename="double" name="kappa" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;kappa" /><s:basetype optional="false" unbounded="false" typename="double" name="lambda" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;lambda" /><s:basetype optional="false" unbounded="false" typename="double" name="entropy" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;entropy" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Hit" name="hits" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResultResponse&gt;hits"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Hit" name="" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hit"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="id" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hit&gt;id" /><s:basetype optional="false" unbounded="false" typename="string" name="title" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hit&gt;title" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="Hsp" name="hsps" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hit&gt;hsps"><s:elementtype><s:complextype optional="false" unbounded="false" typename="Hsp" name="" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp"><s:elements><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="score" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;score" /><s:basetype optional="false" unbounded="false" typename="double" name="bitScore" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;bitScore" /><s:basetype optional="false" unbounded="false" typename="double" name="expect" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;expect" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="queryStart" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;queryStart" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="subjectStart" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;subjectStart" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="identity" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;identity" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="positive" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;positive" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="gaps" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;gaps" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="subjectLength" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;subjectLength" /><s:basetype optional="false" unbounded="false" typename="string" name="queryAlignment" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;queryAlignment" /><s:basetype optional="false" unbounded="false" typename="string" name="subjectAlignment" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;subjectAlignment" /><s:basetype optional="false" unbounded="false" typename="string" name="midline" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Hsp&gt;midline" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> java.lang.String true input 0 'text/xml' 0 dbCount 0 'text/plain' 0 dbLength 0 'text/plain' 0 effectiveSearchSpace 0 'text/plain' 0 kappa 0 'text/plain' 0 lambda 0 'text/plain' 0 entropy 0 'text/plain' 1 hits 1 l('text/xml') net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterHitsxpath0xml-text0nodelist11nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity dom4j:dom4j:1.6 workflow dom4j dom4j 1.6 716010169 java.lang.String true xpath 0 'text/plain' java.lang.String true xml-text 0 'text/xml' 1 nodelist 1 l('text/plain') 1 nodelistAsXML 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecastToXmlinput0output00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true input 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastResultParametersInjobId0output00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="BlastJobResult" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}BlastJobResult"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobResult&gt;jobId" /></s:elements></s:complextype></s:extensions> java.lang.String true jobId 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemrs_blastdb0sequence0jobId00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemrs_blast_statusjobId0net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 1000 300 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterHits_xpath_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity //*[local-name(.)='hits'] net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBlastJobResultparametersblastResultParametersInoutputblastJobResultOutinputBlastJobResultparametersfilterHitsxpathfilterHits_xpath_defaultValuevaluefilterHitsxml-textBlastJobResultparameterscastToXmlinputfilterHitsnodelistAsXMLblastResultParametersInjobIdmrs_blastjobIdmrs_blastdbdbmrs_blastsequencesequencemrs_blast_statusjobIdmrs_blastjobIdhitscastToXmloutput blastp using the MRS system 2009-11-03 17:38:46.35 CET This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database. Databases that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb". 2009-11-03 17:38:46.35 CET M. L. Hekkelman & Bas Vroling 2009-11-03 17:38:46.35 CET mrs_blastdb00 2009-11-03 17:38:45.894 CET text/plain 2009-11-03 17:38:45.894 CET sequence00 2009-11-03 17:38:45.894 CET text/plain 2009-11-03 17:38:45.894 CET jobIdblastParametersInquery0db0reportLimit0program0output00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="Blast" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Blast"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="query" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;query" /><s:basetype optional="false" unbounded="false" typename="string" name="program" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;program" /><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;db" /><s:basetype optional="false" unbounded="false" typename="string" name="mrsBooleanQuery" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;mrsBooleanQuery" /><s:complextype optional="false" unbounded="false" typename="Parameters" name="params" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;params"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="matrix" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;matrix" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="wordSize" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;wordSize" /><s:basetype optional="false" unbounded="false" typename="double" name="expect" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;expect" /><s:basetype optional="false" unbounded="false" typename="boolean" name="lowComplexityFilter" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;lowComplexityFilter" /><s:basetype optional="false" unbounded="false" typename="boolean" name="gapped" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;gapped" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="gapOpen" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;gapOpen" /><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="gapExtend" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}Parameters&gt;gapExtend" /></s:elements></s:complextype><s:basetype optional="false" unbounded="false" typename="unsignedInt" name="reportLimit" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;Blast&gt;reportLimit" /></s:elements></s:complextype></s:extensions> java.lang.String true query 0 'text/plain' java.lang.String true program 0 'text/plain' java.lang.String true db 0 'text/plain' java.lang.String true mrsBooleanQuery 0 'text/plain' java.lang.String true params 0 'text/xml' java.lang.String true reportLimit 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBlastparameters0parameters00attachmentList11net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.WSDLActivity http://mrs.cmbi.ru.nl/mrsws/blast/wsdl Blast net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastParametersOutinput0jobId00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="BlastResponse" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}BlastResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> java.lang.String true input 0 'text/xml' 0 jobId 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastParametersIn_program_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity blastp net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastParametersIn_reportLimit_defaultValuevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 250 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastParametersInquerysequenceblastParametersIndbdbblastParametersInreportLimitblastParametersIn_reportLimit_defaultValuevalueblastParametersInprogramblastParametersIn_program_defaultValuevalueBlastparametersblastParametersInoutputblastParametersOutinputBlastparametersjobIdblastParametersOutjobId 2009-11-03 17:38:45.941 CET mrs_blast 2009-11-03 17:38:45.941 CET 2009-11-03 17:38:45.941 CET mrs_blast_statusjobId00 2009-11-03 17:38:46.19 CET text/plain 2009-11-03 17:38:46.19 CET outstatusBlastJobStatusparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.WSDLActivity http://mrs.cmbi.ru.nl/mrsws/blast/wsdl BlastJobStatus net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastJobStatusOutinput0status00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="BlastJobStatusResponse" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}BlastJobStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="status" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobStatusResponse&gt;status" /></s:elements></s:complextype></s:extensions> java.lang.String true input 0 'text/xml' 0 status 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecheckStatusstatus0isComplete00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true status 0 'text/plain' 0 isComplete 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFail_if_falsetest0net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow java.lang.String true test 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeblastJobStatusInjobId0output00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="BlastJobStatus" name="parameters" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}BlastJobStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="{http://mrs.cmbi.ru.nl/mrsws/blast}&gt;BlastJobStatus&gt;jobId" /></s:elements></s:complextype></s:extensions> java.lang.String true jobId 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBlastJobStatusparametersblastJobStatusInoutputblastJobStatusOutinputBlastJobStatusparameterscheckStatusstatusblastJobStatusOutstatusFail_if_falsetestcheckStatusisCompleteblastJobStatusInjobIdjobIdoutstatuscheckStatusisComplete mrs_blast_status 2009-11-03 17:38:46.35 CET 2009-11-03 17:38:46.35 CET 2009-11-03 17:38:46.35 CET