Workflow34graph00
http://temp
2009-11-13 00:47:24.801 EST
http://bio2rdf
2009-11-16 15:21:22.624 EST
http://labrie
2009-11-13 00:31:05.765 EST
sparql_endpoint00
http://localhost:8890/sparql
2009-11-17 01:00:39.985 EST
sparql_query00
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
}
2009-11-17 01:05:35.11 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/pubmed:Article> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/pubmed:Article> .
?s <http://bio2rdf.org/ns/pubmed#xRelated> ?seeAlso .
}
2009-11-17 01:08:26.154 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
}
2009-11-17 01:02:50.100 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/pubmed:Article> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
2009-11-17 01:07:20.984 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?s
WHERE {
?s a <http://bio2rdf.org/ns/pubmed:Article> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
};
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/pubmed:Article> .
?s <http://bio2rdf.org/ns/pubmed#xRelated> ?seeAlso .
}
2009-11-17 01:34:20.804 EST
o2bio2rdf_subject_fetch_pubmed_logo1Insert_ntriplesgraph0ntriples0sparql_endpoint_url0sparql_insert_ntriples_log11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePubmed_xml_rdfiserpubmed_bmuri0ncbi_pubmed_xml2ntriples00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSPARQL_querysparql_endpoint0graph0sparql_query0sparql_query_bmuri_list11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesemicolonvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
;
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCountstringlist0utility_stringlist_count00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInsert_ntriplesgraphInsert_ntriplesntriplesInsert_ntriplessparql_endpoint_urlPubmed_xml_rdfiserpubmed_bmuriSPARQL_querysparql_endpointSPARQL_querygraphSPARQL_querysparql_querySplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexCountstringlisto2bio2rdf_subject_fetch_pubmed_logo1
demo_who_is_dr_labrie_from_bio2rdf_cache
2009-11-14 00:43:01.137 EST
demo_who_is_dr_labrie_bio2rdf_cache
2009-11-14 00:34:42.466 EST
Sponge into Virtuoso triplestore the needed ressource from PubMed [myexperiment:pubmed_step3_describe]
2009-11-17 02:04:45.735 EST
FrancoisBelleau@yahoo.ca
2009-11-09 12:16:49.168 EST
Spounge into Virtuoso triplestore the needed ressource from PubMed [myexperiment:pubmed_step3_describe]
2009-11-17 02:04:14.203 EST
query = labrie,f
query = labrie
2009-11-09 12:17:27.970 EST
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:39:27.342 EST
[myexperiment:pubmed_step3_describe]
2009-11-17 01:09:19.344 EST
query = morissette,j
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:56:25.278 EST
bio2rdf_subject_fetch_pubmed
2009-11-16 15:20:24.54 EST
Get a list of paper from pubmed.
2009-11-16 15:20:42.907 EST
demo_who_is_dr_labrie
2009-11-09 12:17:09.526 EST
dataflow0ntriples00
<http://test> <http://test> <http://test> .
2009-11-09 19:01:39.958 EST
graph00
http://test
2009-11-09 18:55:38.421 EST
sparql_endpoint_url00
http://localhost:8890/sparql
2009-11-09 19:01:22.419 EST
sparql_insert_ntriples_logo1o2SPARQL_insert_ntriplesntriples0graph0sparql_port0sparql_host0html00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
ntriples
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_host
0
text/plain
java.lang.String
true
sparql_port
0
text/plain
0
html
0
'text/plain,text/html'
UserNameHere
2009-01-23 00:53:10.565 EST
UserNameHere
2009-01-22 22:44:53.200 EST
UserNameHere
2009-01-22 23:12:14.802 EST
UserNameHere
2009-11-02 14:11:03.534 EST
UserNameHere
2009-01-23 00:08:37.503 EST
UserNameHere
2009-10-06 00:36:49.673 EDT
UserNameHere
2009-01-25 22:33:59.715 EST
UserNameHere
2009-01-22 22:58:39.533 EST
UserNameHere
2009-10-06 00:23:08.363 EDT
UserNameHere
2009-01-25 22:31:23.275 EST
UserNameHere
2009-01-23 00:09:42.877 EST
UserNameHere
2009-01-23 00:03:55.477 EST
UserNameHere
2009-01-26 23:10:57.600 EST
UserNameHere
2009-11-02 14:07:23.431 EST
UserNameHere
2009-01-22 22:42:57.377 EST
UserNameHere
2009-01-23 00:05:21.845 EST
UserNameHere
2009-01-23 00:06:51.677 EST
UserNameHere
2009-01-23 00:44:07.662 EST
UserNameHere
2009-10-20 01:19:54.646 EDT
UserNameHere
2009-01-26 23:08:43.41 EST
UserNameHere
2009-01-23 00:07:17.366 EST
UserNameHere
2009-10-06 00:28:07.839 EDT
UserNameHere
2009-01-25 22:32:29.783 EST
UserNameHere
2009-01-23 00:06:17.667 EST
UserNameHere
2009-01-26 23:11:58.183 EST
UserNameHere
2009-01-25 22:17:04.902 EST
UserNameHere
2009-01-25 22:27:57.661 EST
UserNameHere
2009-10-06 00:34:47.715 EDT
UserNameHere
2009-11-02 14:01:31.829 EST
UserNameHere
2009-01-23 00:08:17.891 EST
UserNameHere
2009-01-23 00:03:19.809 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1regex0group0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehtml_donevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
>, (.*?) -- done
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcat_log_messagemsg0graph0sparql_url0subject0log00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
msg
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_url
0
text/plain
java.lang.String
true
subject
0
text/plain
0
log
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_sparql_urlsparql_url0port00host00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sparql_url
0
text/plain
0
host
0
text/plain
0
port
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFirst_subjectntriples0subject00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
ntriples
0
text/plain
0
subject
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSPARQL_insert_ntriplesntriplesSPARQL_insert_ntriplesgraphSPARQL_insert_ntriplessparql_portSPARQL_insert_ntriplessparql_hostFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexregexFilter_list_of_strings_extracting_match_to_a_regexgroupConcat_log_messagemsgConcat_log_messagegraphConcat_log_messagesparql_urlConcat_log_messagesubjectSplit_sparql_urlsparql_urlFirst_subjectntriplessparql_insert_ntriples_logo1o2
FrancoisBelleau@yahoo.ca
2009-10-20 01:20:39.936 EDT
sparql_insert_ntriples.t2flow
2009-11-02 14:00:03.250 EST
test values:
graph=http://hexokinase
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:03:31.963 EST
sparql_insert_ntriples
2009-11-09 19:11:40.925 EST
test values:
graph=http://labrie
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:14:41.522 EST
test values:
graph=http://hexokinase
2009-10-20 01:21:14.365 EDT
Load RDF triples in NTRIPLES format using a SPARQL insert query.
test values:
graph=http://labrie
sparql_endpoint_url = http://localhost:8890/sparql
2009-11-09 19:12:50.238 EST
Workflow34pubmed_bmuri00
http://bio2rdf.org/pubmed:18472304
2009-11-13 23:40:55.609 EST
http://
2009-11-13 23:37:19.795 EST
ncbi_pubmed_xml2ntriplesRdfise_pubmed_xml_from_NCBIbmuri0xml2ntriples_xsl0xml_directory_path0ncbi_xml2ntriples00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokepubmed2ntriples_xslvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
pubmed2ntriples.xsl
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokexml_tempvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
xml/temp
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRdfise_pubmed_xml_from_NCBIbmuriRdfise_pubmed_xml_from_NCBIxml2ntriples_xslRdfise_pubmed_xml_from_NCBIxml_directory_pathncbi_pubmed_xml2ntriples
query = labrie,f
query = labrie
2009-11-09 12:17:27.970 EST
query = morissette,j
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:56:25.278 EST
ncbi_pubmed_xml2ntriples
2009-11-14 00:09:17.92 EST
FrancoisBelleau@yahoo.ca
2009-11-09 12:16:49.168 EST
2009-11-14 00:02:20.438 EST
ncbi_xml2ntriples
2009-11-14 00:02:01.170 EST
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:39:27.342 EST
demo_who_is_dr_labrie
2009-11-09 12:17:09.526 EST
Workflow34xml_directory_path00
xml/temp
2009-11-13 23:37:07.934 EST
bmuri00
http://bio2rdf.org/pubmed:18472304
2009-11-13 23:40:55.609 EST
http://
2009-11-13 23:37:19.795 EST
xml2ntriples_xsl00
pubmed2ntriples.xsl
2009-11-13 23:52:28.668 EST
pubmed
2009-11-13 23:36:54.778 EST
o1ncbi_xml2ntripleso2Get_document_description_in_XMLxml_folder_path0ncbi_bmuri0xml_filename00ncbi_get_xml00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRdfise_document_with_XSLfilename_xml0xml2ntriples_xsl0xml2ntriples00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_directorydirectory0directory_copy00log00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
directory
0
text/plain
0
log
0
text/plain
0
directory_copy
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_document_description_in_XMLxml_folder_pathGet_document_description_in_XMLncbi_bmuriRdfise_document_with_XSLfilename_xmlRdfise_document_with_XSLxml2ntriples_xslCreate_directorydirectoryo1ncbi_xml2ntripleso2
FrancoisBelleau@yahoo.ca
2009-11-09 12:16:49.168 EST
query = labrie,f
query = labrie
2009-11-09 12:17:27.970 EST
2009-11-14 00:02:20.438 EST
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:39:27.342 EST
demo_who_is_dr_labrie
2009-11-09 12:17:09.526 EST
query = morissette,j
query = labrie,f
query = labrie
query = h1n1
2009-11-02 12:56:25.278 EST
ncbi_xml2ntriples
2009-11-14 00:02:01.170 EST
Workflow46ncbi_bmuri00xml_folder_path00ncbi_get_xmlxml_filenameGet_NCBI_XML_By_ID_Namespacenamespace0id0outputText00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
id
0
'text/plain'
java.lang.String
true
rettype
0
'text/plain'
java.lang.String
true
retmode
0
'text/plain'
java.lang.String
true
namespace
0
text/plain
0
outputText
0
'text/plain'
UserNameHere
2009-11-01 17:18:21.973 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWrite_Text_Filefilecontents0outputFile0outputFile00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
outputFile
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
outputFile
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesplit_bmuribmuri0namespace00id00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
bmuri
0
text/plain
0
namespace
0
text/plain
0
id
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_xml_filenamenamespace0path0id0xml_filename00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
path
0
text/plain
java.lang.String
true
namespace
0
text/plain
java.lang.String
true
id
0
text/plain
0
xml_filename
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketest_if_filename_existid0filename0id_copy00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
filename
0
text/plain
java.lang.String
true
id
0
text/plain
0
id_copy
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_NCBI_XML_By_ID_NamespacenamespaceGet_NCBI_XML_By_ID_NamespaceidWrite_Text_FilefilecontentsWrite_Text_FileoutputFilesplit_bmuribmuribuild_xml_filenamenamespacebuild_xml_filenamepathbuild_xml_filenameidtest_if_filename_existidtest_if_filename_existfilenamencbi_get_xmlxml_filename
FrancoisBelleau@yahoo.ca
2009-11-01 13:26:59.574 EST
Rdfise a Pubmed article. This means to convert its XML description to RDF/Ntriples format using an XML stylesheet available at http://www.myexperiment.org/files/178/download/pubmed2rdf-n3.xsl.
2009-11-01 13:30:18.501 EST
test values:
ncbi_bmuri = http://bio2rdf.org/pubmed:18472304
xml_folder_path = xml/labrie
2009-11-01 15:05:58.30 EST
test values:
pubmed_bmuri = http://bio2rdf.org/pubmed:18472304
2009-11-01 13:29:40.885 EST
Rdfise a pumed document which means to convert its XML description to RDF/Ntriples format using an XML stylesheet available at http://www.myexperiment.org/files/178/download/pubmed2rdf-n3.xsl.
2009-11-01 13:29:16.88 EST
test values:
ncbi_bmuri = http://bio2rdf.org/pubmed:18472304
ncbi_bmuri = http://bio2rdf.org/gene:15275
xml_folder_path = xml/labrie
2009-11-01 17:30:51.792 EST
Get XML description of a NCBI document using efetch service.
2009-11-01 14:52:21.266 EST
Get XML description of a NCBI document using
2009-11-01 14:51:48.213 EST
test values:
ncbi_bmuri = http://bio2rdf.org/pubmed:18472304
xml_folder_path = temp/labrie
2009-11-01 14:51:20.337 EST
Rdfise a pumed document which means to convert its XML description to RDF/Ntriples format using an XML stylesheet available at
2009-11-01 13:28:44.13 EST
test values:
pubmed_bmuri =
2009-11-01 13:21:49.4 EST
test values:
pubmed_bmuri = http://bio2rdf.org/pubmed:18472304
2009-11-01 13:22:44.854 EST
Workflow67filename_xml00xml2ntriples_xsl00xml2ntriplesTransform_XMLxslFileURL0inFileURL0outputStr00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
xslFileURL
0
'text/plain'
java.lang.String
true
outFileURL
0
'text/plain'
java.lang.String
true
inFileURL
0
'text/plain'
java.lang.String
true
outputExt
0
'text/plain'
0
outputStr
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_filename_ntfilename_xml0filename_nt00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
filename_xml
0
text/plain
0
filename_nt
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWrite_Text_Filefilecontents0outputFile0outputFile00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
outputFile
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
outputFile
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketest_file_existsfilename0filename_xml00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
filename
0
text/plain
0
filename_xml
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTransform_XMLxslFileURLTransform_XMLinFileURLbuild_filename_ntfilename_xmlWrite_Text_FilefilecontentsWrite_Text_FileoutputFiletest_file_existsfilenamexml2ntriples
Rdfise all XML document from a specific folder using the provided XSL stylesheet.
2009-11-01 15:41:01.625 EST
xml_folder_path = xml/labrie
xml2ntriples_xsl =
2009-11-01 15:41:36.454 EST
xml_folder_path = xml/labrie,f/
xml2ntriples_xsl = pubmed2ntriples.xsl
2009-11-02 00:00:06.844 EST
FrancoisBelleau@yahoo.ca
2009-11-01 15:40:57.7 EST
filename_xml = xml/labrie,f/pubmed_82132.xml
xml2ntriples_xsl = pubmed2ntriples.xsl
2009-11-02 00:01:05.977 EST
xml_folder_path = xml/labrie
xml2ntriples_xsl = pubmed2ntriples.xsl
2009-11-01 15:42:07.840 EST
Rdfise all XML document from a specific folder using the provided XSL stylesheet.
2009-11-01 15:40:38.244 EST
2009-11-01 15:40:59.192 EST
Workflow2sparql_query00
2009-11-17 00:28:48.97 EST
The URL of a SPARQL query to be submited.
SELECT DISTINCT ?xPubMed
WHERE {
?Gene a <http://bio2rdf.org/ns/geneid#Gene> .
?Gene <http://bio2rdf.org/ns/bio2rdf#xPubMed> ?xPubMed .
}
ORDER BY DESC(count(*))
2009-11-09 11:37:58.68 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso . }
2009-11-17 00:33:30.917 EST
SELECT DISTINCT ?xPubMed
WHERE {
?Gene a <http://bio2rdf.org/ns/geneid#Gene> .
?Gene <http://bio2rdf.org/ns/bio2rdf#xPubMed> ?xPubMed .
}
ORDER BY DESC(count(*))
2009-11-09 11:29:33.239 EST
SELECT ?xRelation
WHERE {
?Pathway a <http://bio2rdf.org/ns/kegg#Pathway> .
FILTER (?Pathway = <http://bio2rdf.org/path:mmu00010>) .
?Pathway <http://bio2rdf.org/ns/kegg#xRelation> ?xRelation .
}
2009-11-10 21:39:13.791 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
}
2009-11-17 00:34:34.699 EST
http://localhost:8890/sparql?default-graph-uri=&should-sponge=&query=SELECT+DISTINCT+%3FxPubMed%0D%0AWHERE+{%0D%0A++%3FGene+a+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fgeneid%23Gene%3E+.+%0D%0A++%3FGene+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fbio2rdf%23xPubMed%3E+%3FxPubMed+.%0D%0A}%0D%0AORDER+BY+DESC(count(*))&format=text%2Fhtml&debug=on&timeout=
2009-11-09 11:29:24.214 EST
sparql_endpoint00
http://localhost:8890/sparql
2009-11-10 21:39:50.908 EST
graph00
http://temp
2009-11-17 00:28:32.601 EST
http://kegg2go
2009-11-10 21:39:38.331 EST
o1sparql_query_bmuri_listbmuris_countbmuris_stringo2Get_Web_Page_from_URLurl0contents00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
0
contents
0
'text/plain,text/html'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11count00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
0
count
0
text/plain
UserNameHere
2009-11-07 23:37:08.293 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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1.0
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0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehtml_tdvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
<td>(.*)</td>
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1.0
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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1.0
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_sparql_urlsparql_query0sparql_endpoint0graph0sparql_query_url00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sparql_query
0
text/plain
java.lang.String
true
sparql_endpoint
0
text/plain
java.lang.String
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graph
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text/plain
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sparql_query_url
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Web_Page_from_URLurlSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexgroupFilter_list_of_strings_extracting_match_to_a_regexregexMerge_String_List_to_a_StringstringlistBuild_sparql_urlsparql_queryBuild_sparql_urlsparql_endpointBuild_sparql_urlgrapho1sparql_query_bmuri_listbmuris_countbmuris_stringo2
sparql_query_bmuri_list
2009-11-09 11:37:16.669 EST
Execute a Virtuoso SPARQL query specified by the URL and return the bmuris result list.
The SPARQL query query must return only one variable, of type URI, in the SELECT statement.
2009-11-09 11:35:57.963 EST
sparql_query_bmuris
2009-11-09 11:33:22.596 EST
FrancoisBelleau@yahoo.ca
2009-11-09 11:32:51.395 EST
Workflow68stringlist00utility_stringlist_countstringlist_countin0out00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
in
0
text/plain
0
out
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestringlist_countinutility_stringlist_count
utility_stringlist_count
2009-11-17 01:37:51.90 EST