Workflow11query00 A full text search query string. example: hki, parkinson disease 2009-11-28 13:13:38.178 EST hk1 2009-11-28 13:10:41.263 EST kegg_namespace00 One of KEGG database name The official list is here : example: path, genes 2009-11-28 13:11:55.398 EST One of KEGG database name The official list is here : http://www.myexperiment.org/workflows/967 example: path, genes 2009-11-28 13:12:58.156 EST path 2009-11-28 13:11:02.408 EST kegg_search_bmuriskegg_search_ntriplessearch_count_ntripleso1bfindstring0return00net.sf.taverna.t2.activitieswsdl-activity0.8net.sf.taverna.t2.activities.wsdl.WSDLActivity http://soap.genome.jp/KEGG.wsdl bfind net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_bfind_querysearch0kegg_namespace0search_query00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true kegg_namespace 0 text/plain java.lang.String true search 0 text/plain 0 search_query 0 text/plain net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow java.lang.String true string 0 'text/plain' java.lang.String true regex 0 'text/plain' 1 split 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_bmuristringlist1search0namespace0bmuris11count_ntriple00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true stringlist 1 text/plain java.lang.String true namespace 0 text/plain java.lang.String true search 0 text/plain 1 bmuris 1 text/plain 0 count_ntriple 0 text/plain net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow java.lang.String true stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' 0 concatenated 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_search_ntriplesearch0namespace0bmuri0search_ntriple00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true bmuri 0 text/plain java.lang.String true search 0 text/plain java.lang.String true namespace 0 text/plain 0 search_ntriple 0 text/plain net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebfindstringbuild_bfind_querysearch_querybuild_bfind_querysearchquerybuild_bfind_querykegg_namespacekegg_namespaceSplit_string_into_string_list_by_regular_expressionstringbfindreturnSplit_string_into_string_list_by_regular_expressionregexeolvalueextract_bmuristringlistSplit_string_into_string_list_by_regular_expressionsplitextract_bmurisearchqueryextract_bmurinamespacekegg_namespaceMerge_String_List_to_a_Stringstringlistbuild_search_ntriplesearch_ntriplebuild_search_ntriplesearchquerybuild_search_ntriplenamespacekegg_namespacebuild_search_ntriplebmuriextract_bmuribmuriskegg_search_bmurisextract_bmuribmuriskegg_search_ntriplesMerge_String_List_to_a_Stringconcatenatedsearch_count_ntriplesextract_bmuricount_ntripleo1build_bfind_querysearch_query This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's official database. The results are returned in RDF ntriples format. TAG: kegg, search, knowledgescope, bio2rdf, bfind 2009-11-28 13:33:52.713 EST Search one of KEGG<s database for a specific txt query [myexperiments:kegg_search2rdf] 2009-11-28 13:10:09.396 EST FrancoisBelleau@yahoo.ca 2009-11-28 13:14:16.44 EST Triplify search results from KEGG bfind soap service [myexperiments:kegg_search2rdf] 2009-11-28 13:40:33.240 EST This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's official database. The results are returned in RDF ntriples format. TAG: kegg, search, knowledgescope, bio2rdf, bfind, soap 2009-11-28 13:34:20.440 EST This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's official database. The results are returned in RDF ntriples format. 2009-11-28 13:17:47.919 EST test values: search = hk1 kegg_namespace = path 2009-10-25 13:43:38.879 EDT Triplify search results from KEGG bfind SOAP service [myexperiments:kegg_search2rdf] 2009-11-30 10:09:17.415 EST test values: search = hk1 search = parkinson disease kegg_namespace = path kegg_namespace = genes 2009-10-29 07:27:57.370 EDT This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's database. The results are returned in RDF ntriples format. TAG: kegg, search, knowledgescope, bio2rdf, bfind, soap 2009-11-30 10:09:08.821 EST 2009-11-28 13:13:47.908 EST Search one of KEGG's database for a specific text query [myexperiments:kegg_search2rdf] 2009-11-28 13:14:02.718 EST test values: search = hk1 search = parkinson kegg_namespace = path kegg_namespace = genes 2009-10-25 15:35:04.434 EDT Triplify search results from KEGG Bfind soap service [myexperiments:kegg_search2rdf] 2009-11-28 13:40:04.39 EST