Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 75 results. Use the filters on the left and the search box below to refine the results.
Licence: by-sa Wsdl: http://soap.genome.jp/KEGG.wsdl

Workflow get_elements_by_pathway (1)

Thumb
Retrieve all objects on specified pathway get_elements_by_pathway Input example: path:bsu00010

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_element_relations_by_pathway (1)

Thumb
Retrieve all objects and relations on specified pathway Input example: path:bsu00010

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_drugs_by_pathways (1)

Thumb
Retrieves all drugs on the specified pathway. input example: path:map07025 ; path:eco00020

Created: 2008-10-07

Credits: User Franck Tanoh

Workflow color_pathway_by_elements (2)

Thumb
Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image. Example of inputs: pathway_id: path:bsu00010 element_list: (to add as list) 78 79 fg_color_list:(to add as list) red blue bg_color_list: (to add as list) green yellow

Created: 2008-09-30 | Last updated: 2008-10-01

Credits: User Franck Tanoh

Workflow Kegg pathway diagrams (missing part 3) (2)

Thumb
Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - just duplicating the specified colours. However with almost no Taverna documentation to speak of, none of...

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Gregg Iceton

Uploader

Workflow Kegg pathway diagrams (1)

Thumb
Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram.for each protein draw a diagram of the Kegg pathway that its protein is involved in and where available visualise the structures

Created: 2010-03-13

Credits: User Jannetta

Workflow get_enzymes_by_compound (1)

Thumb
Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_compounds_by_reaction (1)

Thumb
Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

Created: 2008-10-07

Credits: User Franck Tanoh

Workflow get_compounds_by_pathway (1)

Thumb
Retrieves all compounds on the specified pathway Example of input: path:eco00020

Created: 2008-10-07

Credits: User Franck Tanoh

Workflow get_best_best_neighbors_by_gene (1)

Thumb
Search the best-best neighbor of a gene in all organisms. Example of input: gene_id: eco:b0002 offset: 1 limit: 10

Created: 2008-10-02

Credits: User Franck Tanoh

Results per page:
Sort by: