myExperiment - Workflows

Results per page:

Sort by:

Showing 3 results. Use the filters on the left and the search box below to refine the results.

Tag: ncbi

Wsdl: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl

or http://www.ebi.ac.uk/Tools/picr/service?wsdl

Remove all filters

Taverna 1

Uploader

Hamish McWilliam

Sequence_or_ID_or_GI (1)

Download

Get a sequence in fasta format given one of: An NCBI GI number (e.g. 75251068). An entry identifier in database:identifier format (e.g. uniprot:Q96247). 3. A sequence entry in a format supported by EMBOSS seqret.

Created: 2008-06-07

Credits: Hamish McWilliam

Attributions: Structure_or_ID

Taverna 1

Uploader

Hamish McWilliam

NCBI_QBLAST (2)

Download

Perform an NCBI BLAST sequence similarity search using NCBI's QBLAST service (see http://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.

Created: 2008-06-07 | Last updated: 2008-06-07

Credits: Hamish McWilliam

Taverna 2

Uploader

Rafael C. Jimenez

Get homologous from an NCBI homoloGene.dat... (1)

Download

Get homologous from NCBI homoloGene for a lsit of UniProt protein accession. This workflow is useful if you have a long list of protein accessions. Use PICR to convert UniProt to RefSeq, get homologous from homoloGene and convert RefSeq results to UniProt. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Created: 2011-10-20 | Last updated: 2011-10-27

Credits: Rafael C. Jimenez

Results per page:

Sort by: