myExperiment - Workflows

« Previous 1 … 8 9 10 11 12 13 Next »

Results per page:

Sort by:

Showing 123 results. Use the filters on the left and the search box below to refine the results.

Type: Taverna 2

Licence: by-nd

Remove all filters

Taverna 2

Uploader

Wbkoets

BowtieToPileup (1)

Download

This example workflow aligns short sequencing reads to a reference genome using Bowtie and generates a SAMtools pileup file. By analysing an actual data set (SNP detection in N. vitripennis) and translating this analysis pipeline into a Taverna workflow, I was able to come up with an easy way of using Taverna for such analysis. I created a Java API (with my limited Java experience) that wraps the command line programs used in the analysis pipeline: Bowtie and some of the SAMtools. Instead of ...

Created: 2010-09-16

Taverna 2

Uploader

Anja Le Blanc

instruments in sxr and euv spectrum (1)

Download

ICS use case 5

Created: 2010-08-20 | Last updated: 2010-08-20

Credits: Anja Le Blanc

Taverna 2

Uploader

Juan Gonzalez

AUTOSTRUCTURE (4)

Download

This is a simple workflow designed to run AUTOSTRUCTURE with an user selected input. The code is a full implementation of the program AUTOSTRUCTURE developed by N. R. Badnell. The entire capability of the original program for arbitrary structure, Auger rate and Radiative rate calculation has been retained. However input driver file selection, driver templates, output selection and output routing have been enabled within the ADAS framework to simplify the production of two types of data, name...

Created: 2010-08-04 | Last updated: 2011-02-27

Taverna 2

Uploader

David Withers

Spreadsheet Import Example (1)

Download

Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file WaterUse.xlsx and generates a graph from the date. The source data is from http://data.gov.uk/

Created: 2010-07-13 | Last updated: 2010-07-13

Taverna 2

Uploader

Achille Zappa

Workflow for Automated Comparative Protein... (2)

Download

This workflow performs "parallel" generic protein sequence analysis. In order to do that a list of known protein identifiers chosen by the biologist enters into the software to perform different multiple sequence alignments and finally phylogenetic analysis.