Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Results per page:
Sort by:
Showing 27 results. Use the filters on the left and the search box below to refine the results.
Type: Taverna 2 Tag: scape Licence: by-sa

Workflow myExperiment Group Activity Report (1)

Thumb
Prepares a report (three CSV files) on the activity of a group on myExperiment.

Created: 2014-08-26

Credits: User Donal Fellows

Uploader

Workflow TIF to JP2 file format migration with qual... (1)

Thumb
This workflow reads a textfile containing absolute paths to TIF image files and converts them to JP2 image files using OpenJPEG (https://code.google.com/p/openjpeg). Based on the input text file, the workflow creates a Taverna list to be processed file by file. A temporary directory is created (createtmpdir) where the migrated image files and some temporary tool outputs are stored. Before starting the actual migration, it is checked if the TIF input images are valid file format instances u...

Created: 2014-05-07 | Last updated: 2014-05-07

Credits: User Sven

Uploader

Workflow ToMaR HDFS Input Directory Processing (2)

Thumb
This workflow allows processing an HDFS input directory using ToMaR. The "hdfs_working_dir" input port is the HDFS input directory which containes the data to be processed by ToMaR. The "toolspec" input port contains the toolspec XML describing operations that can be used (see "operation" input port). The "operation" input port defines the operation to be used in the current ToMaR job execution (see "toolspec" input port, an operation port used here must be defined in the tool specificatio...

Created: 2014-03-04 | Last updated: 2014-03-11

Credits: User Sven

Workflow Slim Migrate And QA mp3 to Wav Using Hadoo... (4)

Thumb
This workflow migrates an input list (available on HDFS) of mp3 files (available on NFS) to wav files (in output directory on NFS) using an ffmpeg Hadoop job. The workflow then compares content of the original mp3 and the migrated wav by first converting the two files to wav using an mpg123 Hadoop job and the identity function respectively, and then using an xcorrSound waveform-compare Hadoop job. The needed Hadoop jobs are available from https://github.com/statsbiblioteket/scape-audio-qa-ex...

Created: 2014-02-21 | Last updated: 2014-06-30

Uploader

Workflow Converts any ImageMagick supported image f... (1)

Thumb
SCAPE Migration Component

Created: 2014-02-12

Credits: User Markus Plangg

Workflow SCAPE Assess Metrics (1)

Thumb
Assesses whether a set of metrics satisfy some provided Quality Level Definition (QLD). The QLD is given as a Schematron schema, and is evaluated by the Java tool library Jing. Jing (http://www.thaiopensource.com/relaxng/jing.html) is assumed to be installed in the current directory.

Created: 2013-08-22 | Last updated: 2013-08-22

Workflow Validate_Compare_Compare_List (1)

Thumb
QA for file migrated to wav. The QA steps include File Format Validation, Significant Property Comparison and xcorrSound waveform-compare file content comparison (all CLI). Input the migrated wav and a "compare-to-wav" file.

Created: 2013-04-15

Credits: User Bolette Jurik

Uploader

Workflow Migration Imagemagick convert no compression (2)

Thumb
Converts an image using imagemagick convert -compress None

Created: 2013-02-25 | Last updated: 2013-02-26

Credits: User Kraxner User Markus Plangg

Attributions:

Uploader

Workflow JP2 to TIFF file format migration with qua... (1)

Thumb
This workflow reads a textfile containing absolute paths to JP2 image files and converts them to TIFF image files using Kakadu's j2k_to_image command line application (http://www.kakadusoftware.com). Based on the input text file, the workflow creates a Taverna list to be processed file by file. A temporary directory is created (createtmpdir) where the migrated image files and some temporary tool outputs are stored. Before converting the files, the JP2 input files are validated using the SC...

Created: 2013-02-07

Credits: User Sven

Workflow Migration ffmpeg audio to wav pcm_s32le (1)

Thumb
Converts audio to wav using ffmpeg with codec pcm_s32le

Created: 2013-01-24

Credits: User Markus Plangg

Results per page:
Sort by: