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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Pack Preparatory working with Biome-BGC Projects database...


Created: 2014-05-26 06:10:06 | Last updated: 2014-05-27 15:23:06

Various meteorology, EPC (ecophysiology parameter) and observation files for Biome-BGC simulation runs.

9 items in this pack

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO METDATA FOR Biome-BGC, HHS, 2001-2002

Created: 2014-05-26 06:07:20

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO METDATA (daily meteorology data) file for Biome-BGC simulation runs, HHS (Hegyhátsál, HU), 2001-2002

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO METDATA + FORESEE FOR Biome-BGC, HHS, 190...

Created: 2014-05-26 06:05:43

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO METDATA (daily meteorology data) file for Biome-BGC simulation runs, HHS (Hegyhátsál, HU), 1901-2100, predictions is came from FORESEE CLM regional model output

File type: Trident (Package)

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO METDATA FOR Biome-BGC, HHS, 1901-2000

Created: 2014-05-26 06:01:41

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO METDATA (daily meteorology data) file for Biome-BGC simulation runs

File type: Plain text

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO EPC GRASSLAND MuSo v2.2 LEAFAREA

Created: 2014-05-26 05:58:54

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO EPC file 'LEAFAREA' for Biome-BGC MuSo v2.2 simulation runs

File type: Trident (Package)

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO EPC GRASSLAND MuSo v2.2 NITROGEN

Created: 2014-05-26 05:57:25

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO EPC file 'NITROGEN' for Biome-BGC MuSo v2.2 simulation runs

File type: Trident (Package)

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob TEST DEMO EPC GRASSLAND MuSo v2.2 HARMONY

Created: 2014-05-26 05:55:49

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO EPC file 'HARMONY' for Biome-BGC MuSo v2.2 simulation runs

File type: Trident (Package)

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob Biome-BGC 4.1.1 executable for Windows

Created: 2014-05-21 05:01:21

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed directory contains all necessary subdirectories and files for running the Biome-BGC model, version 4.1.1 MPI.

File type: Trident (Package)

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob Trusilova et al. (2009) Parameter estimation and val...

Created: 2014-05-21 04:56:56 | Last updated: 2014-05-21 05:15:32

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Trusilova, K., Trembath, J., Churkina, G. (2009) Parameter estimation and validation of the terrestrial ecosystem model Biome-BGC using eddy-covariance flux measurements. Max-Planck-Institut für Biogeochemie, Technical Reports 16, 1-60.      

File type: Adobe PDF

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3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Blob Thornton (2000) User's Guide for Biome-BGC, version ...

Created: 2014-05-21 04:54:33

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This User's Guide give a detailed reference to setting Biome-BGC model.

File type: Adobe PDF

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Creator
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
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Pack Understanding Basics of a Biome-BGC simulation run


Created: 2014-05-21 04:31:40 | Last updated: 2014-05-21 05:03:34

Biome-BGC is a biogeochemical model that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000). The Biome-BGC was developed by the Numerical Terradynamic Simulation Group (NTSG), University of Montana.The executable code of Biome-BGC are embedded in web services and workflows, while input and parameter files or datasets are managed with Biome-BGC Projects d...

3 items in this pack

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3375?size=60x60 It Saverio Vicario
Project Biovel
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Pack Phylogenetic Diversity


Created: 2014-05-19 12:29:08 | Last updated: 2014-05-19 13:13:10

Tools to study diversity across sample and environment taking account the phylogenetic structure of the observation

3 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Stage vectors, Survival and Growth rate curves (demo...


Created: 2014-04-03 08:11:33 | Last updated: 2014-07-25 12:41:24

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

8 items in this pack

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4011?size=60x60 Gb Alex Nenadic
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Pack Taverna 2.5 Biodiversity Starter Pack


Created: 2014-04-02 12:40:42 | Last updated: 2017-01-09 13:09:17

This is a Starter Pack for Taverna 2.5 Biodiversity edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Biodiversity and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

14 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling pooled data or weighted main matrix

Created: 2014-03-28 14:38:43

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 92-93

Created: 2014-03-28 14:31:44

Credits: User Maria Paula Balcazar-Vargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 91-92

Created: 2014-03-28 14:30:15

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 90-91

Created: 2014-03-28 14:24:33

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 87-88

Created: 2014-03-28 14:22:32

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Pooled_matrix_file_Gentiana_LTRE

Created: 2014-03-27 10:37:46 | Last updated: 2014-08-29 13:23:06

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Pooled_matrix_file or weighted main Matrix - what popbio (R package) calls pooled matrix (to see more details: Horvitz, Schemske and Caswell 1997; Horvitz, and Schemske 1995). This is a matrix in a .txt format, all decimal numbers in each matrix must be indicated by dots e.g.: 0.578.To understand how to calculate a pooled matrix or a weighted main Matrix, please see: Choice of a reference matrix (pag: 253, in Horvitz, Schemske and Caswell 1997). This list of matrices will be used to perf...

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