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Taverna 2

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Katy Wolstencroft

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions with mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned. Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2011-01-27 | Last updated: 2012-09-04

Credits: Katy Wolstencroft Alan Williams

Attributions: BiomartAndEMBOSSAnalysis

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Helen Hulme

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Agenda of Bonn tutorial

Created: 2012-09-14 09:51:22

Credits: Helen Hulme Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the list of presentations and workshop items from the Bonn tutorial 2012. The presentations (and many of the workflows and datafiles) for this are in the pack: "Pack for Bonn2012" http://www.myexperiment.org/packs/330

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Taverna 2

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Mcasfrox

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complete part one of assignment

Created: 2012-09-05 | Last updated: 2012-09-05

Credits: Mcasfrox

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Helen Hulme

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Assignment Data - suggested SNPs

Created: 2012-09-05 07:20:29 | Last updated: 2012-09-05 07:22:16

Credits: Helen Hulme

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Here are some SNPs you can use for the assignment on day 3 of the Bonn 2012 Taverna course. The assignment is about SNP annotation and analysis If you would prefer to use some others that you are working with, fine. This data is a column of dbSNP identifiers

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Helen Hulme

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Bonn Taverna Presentation - Case Studies

Created: 2012-09-04 10:17:41 | Last updated: 2012-09-04 13:45:55

Credits: Helen Hulme Katy Wolstencroft Paul Fisher Shoaib Sufi Mcornell Robert Haines

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipeline

File type: PowerPoint 2007 presentation

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Katy Wolstencroft

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Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna