Group: BioVel Training 5-6 Dec 2013 Manchester

Overview

This is a group for all participants of the BioVel training workshop in Manchester, 5-6 December 2013.

 

You should have Taverna Workbench installed on your machines. There is also a discipline-specific Taverna Workbench version which can be downloaded from here.

 

Timetable:

Thursday, 5th December 

10.00 - 10.30 Arrival, Setup and Coffee

10.30 - 11.00 Introductions: round table, learning objectives

11.00 - 11.45 Demonstration of 2 workflows in the BioVeL portal (ENM and Fetch GBIF Occurrence Data)

11.45 - 12.00 Introduction to myExperiment - setting up myExperiment account

12.00 -12.30 Building a simple workflow. Using Taverna Workbench and exploring BiodiversityCatalogue p. 1

12.30 - 1.30 Lunch

1.30 - 2.30 Building a simple workflow. Using Taverna Workbench and exploring BiodiversityCatalogue p. 2 

2.30 - 3.00 Extending the simple workflow. Inputting data directly, via local files, via URL's. Managing spreadsheet data. Importing and exporting data to / from workflows via spreadsheets 

3.00 - 3.30 Exploring Taverna engine 

3.30 - 3.45 Coffee break

3.45 - 4.15 Working the BioVeL portal. In this exercise we will upload the workflow we created in the previous exercise and run it on the BioVeL Portal 

4.15 - 5.00 Taverna Components 

 

Friday, 6th December

9.30 - 10.30 Using Rshell in Taverna Workbench tutorial 

10.30 - 11.00 Introduction to the exercise with R scripts / Bring Your Own Exercise/Research Problem (BYOE) 

11.00 - 11.30 Coffee break and Demonstration. Embedding workflows in your website (Taverna Player) 

11.30 - 12.30 Exercise with R scripts / Bring Your Own Exercise/Research Problem (BYOE) 

12.30 -13.30 Lunch 

13.30 - 14.00 Biodiversity Catalogue for users 

14.00 - 15.30 Exercises in groups 

a) Tool service

b) Registering your service (Biodiversity Catalogue for service providers)

c) Attendees' suggestions

15.30 - 16.00 Wrap-up and feedback 

Created at: Thursday 21 November 2013 16:02:27 (UTC)

Unique name: biovel-5-12-2013

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News


  1. 4438?size=48x48
    Dr Kaveh Ostad Ali Askari joined the BioVel Training 5-6 Dec 2013 Manchester group
    Sunday 05 February 2017 14:15:26 (UTC)
  2. 1217?size=48x48
    Alan Williams shared Multiple selection
    An interaction page that allows multiple selections from a list of values. There is a single input port of depth one called selectionValues There is a single output port of depth one called answers
    Tuesday 31 March 2015 11:37:21 (UTC)
  3. 4011?size=48x48
    Alex Nenadic shared BiodiversityCatalogue presentation
    A set of slides on how to use and register services in BiodiversityCatalogue (presented by Aleksandra Nenadic at the Taverna workshop, 5-6 december 2013, Manchester).
    Friday 06 December 2013 13:50:51 (UTC)
  4. 4059?size=48x48
    Aleksandra Pawlik shared Taverna Workbench Tool Tutorial
    Friday 06 December 2013 13:31:31 (UTC)
  5. 1217?size=48x48
    Alan Williams shared Help information powerpoint
    A set of slides about where to seek help
    Friday 06 December 2013 10:03:42 (UTC)
  6. 4059?size=48x48
    Aleksandra Pawlik shared Introduction to Taverna Workbench - powerpoint file
    Introduction to Taverna Workbench - building workflows, using different data input formats, saving results, using Shim services.
    Thursday 05 December 2013 10:37:24 (UTC)
  7. 3366?size=48x48
    Norman Morrison shared Biodiversity Test Data for Rservice Tutorial
    A small hypothetical set of species incidence data from 4 species measured from 6 sites, for use with the  "Performing statistical analyses using the Rshell processor " tutorial.
    Wednesday 04 December 2013 22:29:48 (UTC)
  8. 4059?size=48x48
    Aleksandra Pawlik shared RShell Tutorial for Taverna Workbench
    RShell Tutorial for Taverna Workbench - using Rshell service in workflows.
    Wednesday 04 December 2013 18:18:23 (UTC)
  9. 4059?size=48x48
    Aleksandra Pawlik shared Taverna Components Tutorial
    Taverna Components Tutorial: creating and using components
    Wednesday 04 December 2013 18:17:05 (UTC)
  10. 4059?size=48x48
    Aleksandra Pawlik shared Taverna Workbench Engine Tutorial
    Taverna Workbench Engine Tutorial: cross and dot product, iteration, looping and control links.
    Wednesday 04 December 2013 18:16:09 (UTC)

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