Group: MediGRID

Overview

This group contains members from the MediGRID project, which is one of the D-Grid community projects in Germany. The main goal of MediGRID is the Development of a Grid middleware integration platform enabling eScience services for biomedical life science.

MediGRID uses the Petri-net-based GWorkflowDL for modeling workflows and the GWES for executing them on a Globus Toolkit 4 based Grid with approx. 4200 CPUs.

 

Created at: Tuesday 25 November 2008 13:25:33 (UTC)

Unique name: medigrid

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  1. 471?size=48x48
    Andreas Hoheisel shared GWorkflowDL: Simple Test Workflow
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    This is a trivial test workflow modeled using the Grid Workflow Description Language ( GWorkflowDL ), which can be executed by means of the Grid Workflow Execution Service ( GWES ).
    Wednesday 08 May 2013 14:51:55 (UTC)
  2. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Structured Loop
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    This workflow is a GWorkflowDL representation of a structured loop that updates the variable "x" in each iteration. This workflow is equivalent to the following pseudo code: x:=0; for ( i:=0; i Please remark that this demonstration workflow does not invoke any external services at all. The calculatio …
    Wednesday 08 May 2013 14:51:55 (UTC)
  3. 889?size=48x48
    Davidjany, and Coriso Silva joined the MediGRID group
  4. 471?size=48x48
    Andreas Hoheisel shared MediGRID FEAT Workflow
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    This workflow is a translation of the VLeMed workflow to the GWorkflowDL format, which is used in MediGRID. The translation of the "cross product" iteration strategy is currrently under work and not yet finished. So this workflow only varies the parameters p1, p2, and p3.
    Friday 13 February 2009 10:25:24 (UTC)
  5. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Structured Discriminator (Alternative C)
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    This workflow is an alternative GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored for the same data group. Other tokens on the place "begin" can be processed recurrentl …
    Tuesday 20 January 2009 11:37:01 (UTC)
  6. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Blocking Discriminator (1-out-of-M Join)
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    This workflow is a GWorkflowDL representation of a blocking discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored and the AND transition is blocked. The pattern is resets if both, A and B have been invoked. Then the …
    Tuesday 20 January 2009 10:53:58 (UTC)
  7. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Structured Discriminator (Alternative B)
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    This workflow is an alternative GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored. The pattern is resets if both, A and B have been invoked. Please note that the transi …
    Monday 19 January 2009 16:53:29 (UTC)
  8. 4387?size=48x48
    Glatard joined the MediGRID group
    Friday 16 January 2009 20:36:17 (UTC)
  9. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Structured Partial Join
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    This workflow is a GWorkflowDL representation of a structured partial join (N-out-of-M join) that invokes D after N=2 invocations of A or B or C (M=3). All next (M-N) invocations of A or B or C are ignored. This is only one out of various possibilities to model this workflow pattern.
    Tuesday 06 January 2009 16:57:02 (UTC)
  10. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Cancelling Discriminator
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    This workflow is a GWorkflowDL representation of a cancelling discriminator that cancels the invocation of B if A has been executed and vice versa. This is only one out of various possibilities to model this workflow pattern. Please regard that this workflow example uses a separate method for cancell …
    Tuesday 06 January 2009 16:48:32 (UTC)
  11. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Structured Discriminator
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    This workflow is a GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored. This is only one out of various possibilities to model this workflow pattern. Notice alternative r …
    Tuesday 06 January 2009 16:25:32 (UTC)
  12. 471?size=48x48
    Andreas Hoheisel shared Workflow Pattern - Multi Merge
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    This workflow is a GWorkflowDL representation of a multi merge that invokes C after each invocation of A or B.
    Tuesday 06 January 2009 16:17:41 (UTC)

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Workflow

Workflow AUGUSTUS Workflow for predicting genes in ... (1)

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AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. Currently, it has been trained to predict genes in human, Drosophila melagonaster, Arabidopsis thaliana, Brugia malayi, Aedes aegypti, Coprinus cinereus, Tribolium castaneum, Schistosoma mansoni, Tetrahymena thermophila, Galdieria sulphuraria and Zea mays. In addition the species parameters of the following species are a courtesy of Jason Stajich: Caenorhabditis elegans, Saccharomyces cerevisiae, Ustilago ma...

Created: 2008-11-25 | Last updated: 2008-12-05

Credits: Network-member MediGRID


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