Group: Bioclipse

Overview

 Group around Bioclipse Scripting Language workflows.

Created at: Monday 13 September 2010 10:29:24 (UTC)

Unique name: bioclipse

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    Egon Willighagen shared Groovy script to convert (part of) CGN data into Linked Data
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    Converts CGN data from [0] to RDF. It uses intermedia TSV files (never mind the file extensions) for the data tab. The 3char ISO country codes are available at [1], but ideally these are pulled out of Wikidata directly. The RDF uses the Darwin Core ontology, QUDT, and Wikidat …
    Thursday 22 January 2015 12:48:36 (UTC)
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    Egon Willighagen shared Finding nodes in Anopheles gambiae pathways with IUPAC names
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    Groovy script to find Anopheles g. metabolites encoded as GPML with OPSIN and provide ChemSpider identifiers.
    Sunday 24 August 2014 14:42:07 (UTC)
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    Egon Willighagen shared Find isotopes with a certain exact match
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    This script lists all isotopes matching a certain exact mass (given a certain error) and outputs the symbol, atomic number, and exact match of the search hits.
    Tuesday 30 July 2013 20:53:34 (UTC)
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    Giribio, and Mcasfrox joined the Bioclipse group
  5. 4506?size=48x48
    Egon Willighagen shared Map a Entrez Gene ID to a Gene Ontology ID
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     BSL Groovy script that uses BridgeDB to convert a Entrez Gene identifier into a Gene ontology identifier.
    Saturday 07 January 2012 10:01:05 (UTC)
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    Christoph Steinbeck, and Abhik1368 joined the Bioclipse group
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    Egon Willighagen shared Extract chemical structures from a Beilstein Journal of Organic Chemistry paper
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     Uses the Oscar4 text mining tool to extract chemical structures from a Beilstein Journal of Organic Chemistry paper and visualizes them in the molecules table. Jericho is used to extract text from the paper's HTML page.
    Thursday 12 May 2011 07:54:41 (UTC)
  8. 4506?size=48x48
    Egon Willighagen created the Bioclipse group
    Monday 13 September 2010 10:29:24 (UTC)

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