myExperiment

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments Year Effect in One Location or Place workflow provides an environment to analyse two or more matrices from different years in one location. The objective of this workflow is to determine the effects of the research years (2 or more) in one place on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is a retrospective analysis (Caswell 1989),...

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Maria Paula Balcazar-Vargas

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Life Table Response Experiments Fixed design year ef...

Created: 2014-02-21 13:12:33 | Last updated: 2014-08-21 08:06:21

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments year effect for multiple places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years of one place) of two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is...

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Norman Morrison

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Embedding an R Script in a Workflow Exercise

Created: 2014-02-13 17:47:42 | Last updated: 2014-02-13 17:52:17

This pack has all the files for the problem based learning exercise of embedding an R Script in a workflow

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Norman Morrison

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Taverna Tool Service

Created: 2014-02-13 17:40:54 | Last updated: 2014-02-13 17:42:58

Taverna Tool service tutorial pack

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Norman Morrison

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Supplementary material for "An Introduction to Desig...

Created: 2014-02-06 16:10:58 | Last updated: 2014-02-06 16:11:35

Supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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Maria Paula Balcazar-Vargas

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Life Table Response Experiments Fixed design Place e...

Created: 2014-01-29 10:42:06 | Last updated: 2014-08-14 08:04:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments place effect workflow provides an environment to analyse one or more matrices (e.g. matrices of different years from the same place) from two or more places. The objective of this workflow is to determine the effects of the research places or localities (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001). LTRE is a retrospectiv...

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Saverio Vicario

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BayesianPhylogeneticInference

Created: 2013-12-11 13:40:50 | Last updated: 2014-05-19 13:01:14

The family propose different steps to perform a bayesian phylogenetic inference

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Saverio Vicario

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JSTInteraction

Created: 2013-12-11 13:12:49 | Last updated: 2014-06-17 15:20:46

Allow to interact with JST web service and JST Webdav server to access service of biodiversity catalogue https://www.biodiversitycatalogue.org/services/31

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Renato De Giovanni

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ENM components

Created: 2013-12-06 17:57:57 | Last updated: 2014-11-17 19:06:40

ENM Components is a set of Taverna components (sub-workflows) specialized in ecological niche modelling (ENM) tasks. They simplify the creation of new workflows by encapsulating details that may not be trivial to implement and they can be reused across different workflows. To use ENM components on new workflows with the Taverna workbench, just click on “import new service” on the “service panel”, choose “component service”, select “myExperiment”...

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Alan Williams

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GBIF transforms

Created: 2013-12-01 11:11:19 | Last updated: 2013-12-12 19:14:24

A set of components to transform GBIF data

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Julian Garrido

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PDL tutorial

Created: 2013-10-31 10:20:59 | Last updated: 2013-10-31 10:34:30

This pack contains the resources to be used in a PDL tutorial: The workflows in the pack use the different options to set up a PDL service (rest, smart rest and PDL server). There is a workflow with an interoperability error and a workflow using an asynchronous VAMDC-PDL service.

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Donal Fellows

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SCAPE Utility Components

Created: 2013-10-28 15:28:32 | Last updated: 2013-11-14 11:20:52

These are utility components for SCAPE; they do miscellaneous things that are needed stereotypically, but which are outside the standard model of SCAPE data items (e.g., because they are not operating on Digital Objects at all).

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Alan Williams

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Test components

Created: 2013-10-25 13:44:34 | Last updated: 2015-12-04 14:10:22

A family for testing

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component family

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Alan Williams

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WebDAV test

Created: 2013-09-16 13:50:08 | Last updated: 2014-02-03 13:53:58

A test family for WebDAV

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Simon Fischer

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RCOMM 2013 Data Mining Challenge

Created: 2013-09-09 16:20:45 | Last updated: 2013-09-09 16:24:00

This pack contains the solution and the input data generator for one of the tasks of the RCOMM 2013 data mining challenge "Who Wants to be a Data Miner?". Participants had to solve the task within 10 minutes. The task was this: Givena variant of the Golf data set (found in the //Samples/data folder) where the attribute Outlook is missing,a decision tree model built on the complete Golf data set, anda utility data set containing only the three distinct values of Golf,create an exampl...

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Raul Palma

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myPack

Created: 2013-09-04 10:57:02 | Last updated: 2013-09-04 11:06:30

test pack

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Eleni

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HD data interpretation

Created: 2013-09-02 13:18:22 | Last updated: 2015-04-03 21:14:41

This workflow pack, was created in order to further analyse and interpret the results from workflow pack 485 (HD chromatin analysis). The workflows in this pack are using the anni web services, implemented by the Biosemantics group.

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Eleni

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HD chromatin analysis

Created: 2013-08-28 12:17:37 | Last updated: 2016-10-28 15:02:27

This pack is comprised by all workflows used for the integration and the analysis of Huntington's Disease (HD) gene expression data and epigenetic datasets in order to establish links between HD and epigenetic regulation in disease.

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Alan Williams

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a

Created: 2013-07-10 13:12:46 | Last updated: 2013-11-14 11:20:52

a

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pinarpink

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Big Data 2013 Paper Supplementary Material

Created: 2013-06-19 07:40:14 | Last updated: 2013-06-19 07:44:43

The zip file contains the datasets used for the evaluation of our BigData paper "Pinar Alper, Khalid Belhajjame, Carole Goble, and Pinar Karagoz. Small is beautiful: Summarizing scientific workflows using semantic an- notations. In Proceedings of the IEEE 2nd International Congress on Big Data (BigData 2013), Santa Clara, CA, USA, June 2013."

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Alan Williams

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Population Model Analysis Family

Created: 2013-05-28 09:39:37 | Last updated: 2013-11-14 11:20:52

A family of components that do analysis of population models.

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Dasands

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Collarborative and Interdisciplinary Research in Adu...

Created: 2013-05-16 18:07:20 | Last updated: 2013-05-16 19:24:33

Immediate Items to define:1 - Definition of Collaborative and Interdisciplinary Education; Adult Education2. Problems of Collaborative and Interdisciplinary Education3. Methods of Collaborative and Interdisciplinary Education4. Implementation of Collaborative and Interdisciplinary Education

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Saverio Vicario

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Analysis of environmental sequences

Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

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David R Newman

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Pack with versions and relationships

Created: 2013-05-02 08:35:29 | Last updated: 2013-05-02 08:40:06

This is a pack to demonstrate both versions (snapshots) and relationships between pack entries.

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Julian Garrido

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pack test

Created: 2013-04-22 10:02:18 | Last updated: 2013-07-04 15:01:56

this is a test

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Donal Fellows

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SCAPE Image Characterisation Component

Created: 2013-04-04 12:39:14 | Last updated: 2013-11-14 11:20:52

These components handle extraction of characteristics from an image.

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Donal Fellows

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SCAPE Image Migration Action

Created: 2013-04-04 10:45:50 | Last updated: 2013-11-14 11:20:52

These components handle the migration of images from one format to another.

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Donal Fellows

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ImageMagick: Convert JPG to TIFF

Created: 2013-04-04 08:53:33 | Last updated: 2013-04-04 09:08:21

Converts a JPG image to a TIFF image

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Hamish McWilliam

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EMBL-EBI Web Services

Created: 2013-03-28 12:41:28 | Last updated: 2013-03-28 12:42:30

The European Bioinformatics Institute (EMBL-EBI) offers a wide range of services covering may biological and bioinformatics domains. This Pack collates a set of workflows that provide wrappers for Web Services developed, and maintained by EMBL-EBI.

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Saverio Vicario

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Perform Short Bayesian Phylogenetic Inference

Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

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Saverio Vicario

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Perform Long Bayesian Phylogenetic Inference

Created: 2013-02-20 14:59:31 | Last updated: 2015-06-12 13:48:46

Phylogenetic inference with mrbayes requires long calculation. So is not possible to keep the taverna engine on for the time required for the analysis. The solution is to break the Workflow in 2 part: before and after submission to mrbayes service.In this pack there are 3 workflows for submission:1) User locally formatted input file (for details in nexus format for mrbayes http://mrbayes.sourceforge.net/wiki/index.php/Manual_3.2)2) User is helped by a GUI (graphical user interface) to define ...

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Marco Roos

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Demo pack for wf4ever

Created: 2013-01-30 13:53:40 | Last updated: 2013-01-30 14:08:08

This pack is a mirror of the Demo pack for the wf4ever review Demo. You should not be using any of this for real work.

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wf4ever

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pinarpink

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Scientific Workflow Motifs - FGCS Special Issue Subm...

Created: 2013-01-28 10:16:31 | Last updated: 2013-01-28 10:19:29

Abstract of our paper describing motifs presented at eSci2012 "While workflow technology has gained momentum in the last decade as a means for specifying and enacting compu- tational experiments in modern science, reusing and repurposing existing workflows to build new scientific experiments is still a daunting task. This is partly due to the difficulty that scientists experience when attempting to understand existing workflows, which contain several data preparation and ada...

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Katy Wolstencroft

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Bioinformatics Workflow Examples

Created: 2013-01-28 08:45:33 | Last updated: 2013-01-28 10:09:41

This pack contains examples of workflows in the field of bioinformatics.

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Jose Enrique Ruiz

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Galaxies Sample Selection Research Object

Created: 2013-01-05 16:51:56 | Last updated: 2013-01-05 16:59:16

In order to understand the evolution of galaxies, detailed analysis of images plays a key role. During the last years telescopes working at different wavelengths have been imaging the whole sky. One example of this is the Sloan Digital Sky Survey. The generated images provides a wealth of information, publicly available, and hence allowing them to be used by any interested group in the study of their own samples of objects or generation of new samples. The two main processing of the ima...

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Jose Enrique Ruiz

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Luminosity Profiles Research Object

Created: 2013-01-05 16:34:46 | Last updated: 2013-01-05 16:58:18

In order to understand the evolution of galaxies, detailed analysis of images plays a key role. During the last years telescopes working at different wavelengths have been imaging the whole sky. One example of this is the Sloan Digital Sky Survey. The generated images provides a wealth of information, publicly available, and hence allowing them to be used by any interested group in the study of their own samples of objects or generation of new samples. The two main processing of the images ge...

7 items in this pack

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David De Roure

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Presentation - End-to-End Semantics

Created: 2012-11-12 15:28:38 | Last updated: 2012-11-13 00:35:30

Keynote talk by David De Roure at SSN workshop at ISWC 2012, Boston, 12 November 2012 In many respects the music industry has gone digital "end-to-end", with success stories in Semantic Web adoption. Science too is dealing with a "digital turn" and the R&D community is active with Semantic Web. Meanwhile the Semantic Sensor Network workshop series has demonstrated the applicability of Semantic Web approaches in the sensor network domain. Looking to the future,...

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David De Roure

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Presentation - Knowledge Infrastructure for Global S...

Created: 2012-11-10 07:47:48 | Last updated: 2012-11-10 09:04:05

Presentation at the First Open Global Systems Science Conference, Brussels, 8-10 November 2012 http://www.gsdp.eu/nc/news/news/date/2012/10/31/first-open-global-systems-science-conference/ Related blog post http://global-systems-science.eu/?p=272

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David De Roure

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Presentation - Introduction to Big Data and its Pote...

Created: 2012-10-25 01:09:14 | Last updated: 2012-10-25 01:09:46

Presentation at Dementia Conference (Evington Initiative) held at Wellcome Trust, 22-23 October 2012. Acknowledgements to McKinsey & Company, also Tim Clark (MGH) and Iain Buchan (University of Manchester), for input to slides.

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Azlinayati

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SKOS vocabularies repository

Created: 2012-10-15 10:11:26

A collection of SKOS vocabularies from the Web

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David De Roure

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Presentation - The Reality of Reproducibility of Com...

Created: 2012-10-12 19:48:14 | Last updated: 2012-10-12 20:14:01

Title: The Reality of Reproducibility of Computational Science Speaker: Carole Goble Event: IEEE e-Science 2012 Event URL: http://www.ci.uchicago.edu/escience2012/ Location: Chicago, US Date: Thursday, October 11, 2012 Formats: .ppt Abstract: Reproducibility in principle underpins the scientific method. For an experimental finding to be reproducible its materials must be available and its methods clear, accurate and transparent. In this talk I will explore the reality of rep...

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