myExperiment

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Maria Paula Balcazar-Vargas

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Age specific survival analysis pack

Created: 2014-07-02 11:49:01 | Last updated: 2015-05-19 09:46:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The age-specific survival analysis pack has a workflow that analyse the basic information on the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time to death.Analyses:Fundamental matrix (N)Variance (var)Coefficient of variation (CV)MeanetaVareta

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Yuliya Fetyukova

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usability test pack4

Created: 2014-06-30 12:23:23 | Last updated: 2014-06-30 12:24:21

test

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John Pybus

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Test Pack

Created: 2014-06-25 12:46:21 | Last updated: 2014-06-25 16:27:41

Testing Pack as RO

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Boltmwj1

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test

Created: 2014-06-21 17:59:54

test

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Maria Paula Balcazar-Vargas

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Matrix Population Model construction pack

Created: 2014-06-19 11:23:27 | Last updated: 2014-07-25 12:48:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow for local executionThe Creation of a stage matrix model Workflow allows us to construct a stage o several stage matrices. This workflow create a stage matrix based on two years census data that contains transitions probabilities from each stage to the next, of tagged or mapped individuals of...

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Cynthia Gibas

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Assembly comparison workflow

Created: 2014-06-15 20:05:38 | Last updated: 2014-06-15 20:07:45

This pack contains workflows used in the paper "Impact of Analytic Provenance in Genome Analysis" by Shatavia Morrison et al. presented at ISBRA 2013 and other MSS currently in preparation.

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Rekha Maryanne Louis

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usability test pack

Created: 2014-06-10 12:40:58

This is a test pack created for usability study of myExperiment from May to August 2014

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Marco Roos

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BioSemantics Concept Profile Generation Workflows

Created: 2014-06-04 12:31:09 | Last updated: 2014-06-04 13:01:44

This pack compiles concept profile-generation workflows by the LUMC/EMC Biosemantics groups.This work is made possible by EU projects 'Workflow Forever' (www.wf4ever-project.org) and RD-Connect (www.rd-connect.eu), and contribution from bioinformatics students from the Hogeschool Leiden.

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Eleni

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Supporting material for Mina et al., Journal of Biom...

Created: 2014-05-31 12:25:42 | Last updated: 2017-04-19 10:38:13

This pack contains the link to the AllegroGraph triple store and the SPARQL endpoint for the nanopublications presented in this paper. The user can login with username: test and password: tester

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Ferenc HORVATH

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Preparatory working with Biome-BGC Projects database...

Created: 2014-05-26 06:10:06 | Last updated: 2014-05-27 15:23:06

Various meteorology, EPC (ecophysiology parameter) and observation files for Biome-BGC simulation runs.

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Ferenc HORVATH

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Understanding Basics of a Biome-BGC simulation run

Created: 2014-05-21 04:31:40 | Last updated: 2014-05-21 05:03:34

Biome-BGC is a biogeochemical model that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000). The Biome-BGC was developed by the Numerical Terradynamic Simulation Group (NTSG), University of Montana.The executable code of Biome-BGC are embedded in web services and workflows, while input and parameter files or datasets are managed with Biome-BGC Projects d...

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Saverio Vicario

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Phylogenetic Diversity

Created: 2014-05-19 12:29:08 | Last updated: 2014-05-19 13:13:10

Tools to study diversity across sample and environment taking account the phylogenetic structure of the observation

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component family

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pinarpink

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LabelFlow evaluation pack

Created: 2014-05-07 21:08:35

This pack contains the material used for the evaluation of LabelFlow and also XLS based result data from experiments

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Stian Soiland-Reyes

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Test pack

Created: 2014-04-29 13:16:38 | Last updated: 2014-04-29 13:17:26

Pack for blab lblahttp://example.com/

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Alan Williams

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GBIF

Created: 2014-04-03 13:11:49

A family of components that provide access to the Global Biodiversity Information Facility (GBIF) registry

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Maria Paula Balcazar-Vargas

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Stage vectors, Survival and Growth rate curves (demo...

Created: 2014-04-03 08:11:33 | Last updated: 2014-07-25 12:41:24

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

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Alex Nenadic

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Taverna 2.5 Bioinformatics Starter Pack

Created: 2014-04-02 12:44:47 | Last updated: 2017-01-09 13:08:53

This is a Starter Pack for Taverna 2.5 Bioinformatics edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Bioinformatics and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

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Alex Nenadic

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Taverna 2.5 Biodiversity Starter Pack

Created: 2014-04-02 12:40:42 | Last updated: 2017-01-09 13:09:17

This is a Starter Pack for Taverna 2.5 Biodiversity edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Biodiversity and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

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Julian Garrido

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Astronomy Taverna 2.5 starter pack

Created: 2014-03-03 17:02:08 | Last updated: 2014-03-03 17:16:57

This is a set of small snippets using Astronomy Taverna. The purpose of this pack is to make the design and development of astronomy Virtual Observatory workflows easier, learning by the example. Additionally, you can find other Astronomy related workflows and snippets related to general functionalities of Taverna.

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