Tag Results

Items tagged with "rnaseq" (4)

Note: some items may not be visible to you, due to viewing permissions.


Workflows (4)
Uploader

Workflow Detrprok (4)

Thumb
In the case study of stranded and prokaryotic RNAseq data, the Det'Rprok workflow detects candidates of 3 kinds of non coding RNA: 5'UTRs, antisense RNAs, and small RNAs.Inputs: i) an mapping file (bam format) containing one valid alignment by read, ii) a feature file (gff format) annotating the genomic sequences used for the mapping. Dependencies (from the Galaxy toolshed): "s_mart", "detrprok_scripts"

Created: 2013-05-20 | Last updated: 2015-11-03

Uploader

Workflow NGS : RNAseq workflow part 1 from Tophat t... (1)

Thumb
Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow NGS : RNA-seq differential expression anal... (1)

Thumb
Analyse paired-end RNA-seq reads of 2 different individuals with FastQC, Tophat2, Cufflinks and Cuffdiff using a reference annotation in gtf format

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow RNAseq_UMG_SDumont_v1 (1)

Thumb
No description

Created: 2020-02-13

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/3769


Alternative Formats

HTML
RDF
XML