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Items tagged with "tophat" (3)

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Workflows (3)

Workflow RNA-Seq workflow with TopHat and Cufflinks... (1)

An example workflow demonstrating the RNA-seq analysis using Bioextract Server. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. (Ref: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html).

Created: 2013-11-09 | Last updated: 2014-04-10

Credits: User zohim User Carol Lushbough User Bioextract Network-member BioExtract Server for Genomics


Workflow NGS : RNAseq workflow part 1 from Tophat t... (1)

Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras


Workflow NGS : RNA-seq differential expression anal... (1)

Analyse paired-end RNA-seq reads of 2 different individuals with FastQC, Tophat2, Cufflinks and Cuffdiff using a reference annotation in gtf format

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

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Non-Information Resource URI: http://www.myexperiment.org/tags/4010

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