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Items tagged with "ontologies" (9)

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Files (1)
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Blob Digital Multimedia Repositories Ontology (DMRO) and ...

Created: 2012-01-29 16:35:26 | Last updated: 2012-01-29 16:38:25

Credits: User Lawrynka

License: Creative Commons Attribution-Share Alike 3.0 Unported License

For the information on the ontology see: http://www.e-lico.eu/?q=node/288 For the information on the original dataset see:    http://www.ecmlpkdd2011.org/challenge.php     The ontology and KB files are zipped into one file.     

File type: ZIP archive

Comments: 0 | Viewed: 205 times | Downloaded: 36 times

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Workflows (8)

Workflow EBI_OLS_TermInfo (1)

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Get details of an ontology term given its identifer. This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.

Created: 2008-07-09

Credits: User Hamish McWilliam

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Workflow Semantic clustering (with AHC) of SPARQL q... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Common classes" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". ...

Created: 2012-01-29 | Last updated: 2012-01-29

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Workflow Semantic clustering (with k-medoids) of SP... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". The SPARQL query is entered in a parameter of "SPARQL selector" operator. The clustering operator (k-medoids) allows to specify which of the query variables are to be used as clustering criteria. If more ...

Created: 2012-01-29

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Workflow Semantic clustering (with alpha-clustering... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Epistemic" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". This ...

Created: 2012-01-29 | Last updated: 2012-01-30

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Workflow Loading OWL files (RDF version of videolec... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/). Operator "Build knowledge base" is responsible for collecting data either from OWL files or SPARQL endpoints or RDF repositories and provide it to the subsequent operators in a workflow. In this workflow it is parametrized in this way, that is builds a Sesame/OWLIM repository from the files specified in "Load file" operators. Paths to OWL files are specified as parameter va...

Created: 2012-01-29 | Last updated: 2012-01-29

Workflow Match concept profiles (6)

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Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2011-12-02 | Last updated: 2014-07-14

Credits: User Marco Roos User Kristina Hettne User Martijn Schuemie User Reinout van Schouwen

Workflow SNPs to Concept Set through Concept Profil... (6)

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Purpose: Currently, this workflow takes one SNP and a concept set as input, calculates the matching score between these, finds co-occuring documents between the query concept and the match concept, finds the concept that contributes the most to the match, and the documents that support this finding. Author comments: The workflow is in Beta stage. It runs, but needs more testing with different parameter settings. This workflow can be used together with other workflows in this pack: http://www...

Created: 2012-06-26 | Last updated: 2013-02-05

Credits: User Kristina Hettne User Eleni User Harish Dharuri User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

Attributions: Workflow Find Supporting Documents Workflow SNP_ID2EntrezGene_ID Workflow DatabaseID to ConceptID Workflow Match gene lists based on information in literature Workflow Match concept profiles Workflow Explain concept scores

Workflow Match concept profiles with predefined set (2)

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Purpose of workflow: The workflow can be used to match a set of concept profiles with predefined set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2013-02-05 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen Network-member BioSemantics

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Non-Information Resource URI: https://www.myexperiment.org/tags/875


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