Duncan Hull's Workflows

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Workflow Genome annotation pipeline demonstrator wo... (2)

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Part of a workflow by Hannah Tipney, adapted by Duncan Hull using GenScan, RepeatMasker and BLAST. http://dx.doi.org/10.1093/nar/gkl320

Created: 2007-10-03

Workflow EBI InterProScan (2)

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EBI InterProScan. Stop fannying around with BLAST and use InterProScan instead.

Created: 2007-10-03

Workflow DOI2PMID (2)

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Converts Digital Object Identifiers into their corresponding PubMed identifiers, if they exist.

Created: 2007-10-03

Workflow getFragWithClosure (2)

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Bit of a hack, but it works now, adds trailing "%90" to the output.

Created: 2007-10-03

Workflow getFragWithClosure (2)

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getFragment with closure "workflow", actually just one service, but need example inputs for smiles string, group and closure parameters.

Created: 2007-10-03

Workflow getFragWithClosure2 (2)

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with parameters

Created: 2007-10-03

Workflow getOntologyTerm (1)

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This service takes a MIRIAM compliant URI and looks up all the synonyms for that URI using ChEBI and other services. Service developed and maintained by Neil Swainston at the MCISB in Manchester.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: User Duncan Hull

Workflow getSynonymsFromSBML (1)

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This service takes an SBML file (for example from the Biomodels database) and extracts synonyms for each of the SBML species in the file, using ChEBI. Service is written and maintained by Neil Swainston at the MCISB.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: User Duncan Hull

Workflow GetReactions (1)

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This workflow takes an arbitrary SBML model from the BioModels database and returns a list of reactions contained in that model.

Created: 2009-05-19 | Last updated: 2009-05-19

Credits: User Duncan Hull

Workflow ChEBI-get_synonyms (1)

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No description

Created: 2007-11-14

Credits: User Duncan Hull

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