Anika Joecker's Workflows

Search filter terms
Filter by type
Filter by tag
Filter by licence
Filter by group
Results per page:
Sort by:
Showing 1 result.

Workflow SifterWorkflow_Prod_Neu (2)

Thumb
Phylogenomic workflow with SIFTER. The workflow first runs an iterative Blast search against the RefSeq database (Pruitt et al. 2007) (only fully sequenced organisms) and filters the results to get putative orthologous and in-paralogous proteins. These sequences are used to build a multiple alignment with MAFFT (Katoh et al. 2005). After filtering out alignment columns with more than 60% gaps, a phylogenetic tree is build. If there are less than 20 proteins in the alignment Phyml (Guindon an...

Created: 2007-11-23 | Last updated: 2008-04-29

Credits: User Anika Joecker

Results per page:
Sort by: