This workflow uses one or more services that are deprecated as of 31st December 2012 (over 12 years ago), and may no longer function. Show details...

[untitled]

Created: 2010-03-16 16:33:35

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Workflow Components

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Inputs (1)

Name	Description
gene_ids

Processors (4)

Name	Type	Description
Nested_workflow	workflow
Nested_workflow_2	workflow
get_compounds_by_pathway	wsdl	Wsdl http://soap.genome.jp/KEGG.wsdl Wsdl Operation get_compounds_by_pathway
get_pathways_by_genes	wsdl	Wsdl http://soap.genome.jp/KEGG.wsdl Wsdl Operation get_pathways_by_genes

Beanshells (6)

Name	Inputs	Outputs
remove_nulls	input	output
pathway_and_abstract	pathway abstracts	output
extract_terms	input	output
add_MeSH_to_string	input	output
remove_Nulls	input	output
concat_abstract_ids	id abstract_text date_text	output

Outputs (3)

Name	Description
pathway_descriptions
compound_ids
pathway_abstracts

Datalinks (7)

Source	Sink
get_pathways_by_genes:return	Nested_workflow:kegg_pathway_id_list
Nested_workflow:pathway_descriptions	Nested_workflow_2:pathway_descriptions
get_pathways_by_genes:return	get_compounds_by_pathway:pathway_id
gene_ids	get_pathways_by_genes:genes_id_list
Nested_workflow:pathway_descriptions	pathway_descriptions
get_compounds_by_pathway:return	compound_ids
Nested_workflow_2:pathway_abstracts	pathway_abstracts

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

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Paul Fisher

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Information Tags (6)

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Information Shared with Groups (1)

eLicoTutorial

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Information Statistics

2057 viewings

1668 downloads

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Citations (0)

None

Version History

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[untitled]

Created by Paul Fisher on Tuesday 16 March 2010 16:33:37 (UTC)

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