EBI Blast

Created: 2007-12-12 01:07:45 Last updated: 2008-01-15 14:41:32

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Workflow Components

Inputs (1)

Name	Description
sequence

Processors (9)

Name	Type	Description
WSArrayofDataXML	local
contentXML	local
poll	arbitrarywsdl
pollXML	arbitrarywsdl
params	local
runWUBlast	arbitrarywsdl
Byte___to_String	local
Byte___to_String1	local
checkStatusWorkflow	workflow

Beanshells (1)

Name	Description	Inputs	Outputs
isDone		status	finished

Outputs (4)

Name	Description
jobid
status
txt result
xml result

Links (13)

Source	Sink
WSArrayofDataXML:output	contentXML:WSArrayofData
contentXML:output	runWUBlast:content
params:output	runWUBlast:params
poll:result	Byte___to_String:bytes
runWUBlast:jobid	checkStatusWorkflow:job
runWUBlast:jobid	poll:jobid
sequence	WSArrayofDataXML:content
pollXML:result	Byte___to_String1:bytes
Byte___to_String1:string	xml result
Byte___to_String:string	txt result
checkStatusWorkflow:status	status
runWUBlast:jobid	jobid
runWUBlast:jobid	pollXML:jobid

Coordinations (2)

Controller	Target
checkStatusWorkflow	poll
checkStatusWorkflow	pollXML

Information Workflow Type

Taverna 1

Information Uploader

George

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

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Information Statistics

1345 viewings

1714 downloads

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Citations (0)

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Version History

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EBI Blast

Created by George on Wednesday 12 December 2007 01:07:45 (UTC)

Last edited by George on Tuesday 15 January 2008 14:41:32 (UTC)

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Other workflows that use similar services (5)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Hamish McWilliam

EBI_WU-BLAST (1)

Download

Perform a BLAST search using the EBI's WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). The default parameters search UniProtKB using blastp. To change the job parameters see Job_params. Note: the WSWUBlast service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement WU-BLAST services (REST or SOAP) should be used instead.

Created: 2008-05-30 | Last updated: 2010-12-06

Credits: Hamish McWilliam

Taverna 1

Uploader

Hamish McWilliam

EBI WU-BLAST with program and database sel... (3)

Download

Run a BLAST analysis using the EBI's WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). This workflow wraps the EBI_WU-BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default. The values presented in the selection menus for the program and database are obtained from the service, using the provided me...

Created: 2009-07-04 | Last updated: 2010-12-06

Credits: Hamish McWilliam

Attributions: EBI_WU-BLAST