Phylogenetic Study Using the Bio Extract Server

Created: 2010-06-17 16:34:50 Last updated: 2010-07-19 20:00:00

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This workflow, created using the BioExtract Server, contains a nucleotide query (using the NCBI Core Nucleotide Database), Blastn (against the Homo sapiens genome), Blastn (against the Mus musculus genome), Transeq, and ClustalW. This workflow was created following the analytical steps described in the journal article "Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations" by Bjorn M Hallstrom and Axel Janke, published in BMC Evolutionary Biology. Although the workflow was based off of the study described in this article, it can be used in other experiments to find the phylogenetical distance between different genomes.

Note: In order to select specific sequences to be used in the workflow, the user must execute the workflow and then pause each of the two "blastn" steps before they begin. The user can then go to the "Extracts" tab and select the results that they would like to use. Once back in the "Extracts" tab, the "Execute/Resume" button at the top of the workflow must be clicked to resume the process.

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BioExtract Server

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Kendra Giesey

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Citations (1)

1. Bjorn M Hallstrom and Axel Janke, Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations, BMC Evolutionary Biology, 27 May 2008, Accessed at: 24 May 2010

Version History

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Phylogenetic Study Using the BioExtract Server

Created by Kendra Giesey on Thursday 17 June 2010 16:34:50 (UTC)
Phylogenetic Study Using the Bio Extract Server

Created by Kendra Giesey on Monday 19 July 2010 19:56:36 (UTC)

Last edited by Kendra Giesey on Monday 19 July 2010 20:00:00 (UTC)

Revision comment:

This version of the workflow contains the steps "Format Conversion" and "Fetch Translation" instead of the original "Transeq" step.

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