Created: 2009-04-07 20:09:32

Create a Neighbor-joining phylogenetic tree, with Kimura distance corrections, from a sequence alignment using the EBI's WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2).

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Review Title: It works but how do I display the tree?

Rating: 4 out of 5

Created: 2010-04-08 17:22:26 | Updated: 2010-04-08 17:22:26

It works but how do I display the tree?

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  • Friday 03 December 2010 13:47:45 (UTC)

    The tree can be viewed using any tool which understands the Newick tree format. There are various tools in PHYLIP (http://evolution.genetics.washington.edu/phylip.html) which can be used to manipulate the tree and create images from it. Many of the PHYLIP tools are included in the Soaplab services (via the PHYLIPNEW EMBASSY package). Many interactive tools are also available, see http://evolution.gs.washington.edu/phylip/software.html#Interactive.


Workflow Other workflows that use similar services (7)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Workflow EBI_ClustalW2 (2)

Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default. Note: the WSClustalW2 service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement ClustalW2 servi...

Created: 2009-04-07 | Last updated: 2010-12-06

Credits: User Hamish McWilliam

Workflow EBI_ClustalW_alignment_tree (2)

Given a set of sequences perform an multiple sequence alignment and from the multiple alignment derive a phylogenetic tree. The popular ClustalW program (see http://www.clustal.org/), as implemented in the EBI's WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2) is used to perform both tasks.

Created: 2008-05-31 | Last updated: 2010-12-03

Credits: User Hamish McWilliam

Attributions: Workflow EBI_ClustalW2 Workflow EBI_ClustalW2_phylogentic_tree